Jatropha Genome Database

JcCB0234411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0234411.10 - phase: 0 /pseudo
         (80 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010890 guanine nucleotide-binding protein beta, putative        92   6e-20

>30190.m010890 guanine nucleotide-binding protein beta, putative
          Length = 377

 Score = 92.0 bits (227), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 50/75 (66%), Positives = 50/75 (66%), Gaps = 7/75 (9%)

Query: 1  MSVAELKARHVAATETVNXXXXXXXXXXXXXXXXXXXXXXVAVAGYARAQGKPPVSFGPT 60
          MSVAELKARHVAATETVN                        VAGYARAQGK PVSFGPT
Sbjct: 1  MSVAELKARHVAATETVNTLRERLKQKRLLLLD-------TDVAGYARAQGKTPVSFGPT 53

Query: 61 DLVCCRTLQGHTGKV 75
          DLVCCRTLQGHTGKV
Sbjct: 54 DLVCCRTLQGHTGKV 68