Jatropha Genome Database

JcCB0231591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231591.10 + phase: 1 /pseudo/partial
         (158 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004540 DNA-directed RNA polymerase subunit, putative           157   1e-39

>29848.m004540 DNA-directed RNA polymerase subunit, putative
          Length = 1203

 Score =  157 bits (398), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/166 (53%), Positives = 104/166 (62%), Gaps = 16/166 (9%)

Query: 1    EKVCNDRTGEMVHSLIFMGPTFYQQLVHMA*DKVKFTQHGAC-PSTYQAVCCRPEAFWWY 59
            E+V N RTGEMV SLIFMGPTFYQ+L+HMA DKVKF   G   P T Q V  R       
Sbjct: 1046 ERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRF---- 1101

Query: 60   QVW*DGA*LPHSSR-CICKPA*ATFYSQRL--LADAYL----PDCKNFTNVIERTVPQSR 112
                 G       R C+     +    +RL  L+D+        CKN  NVI+R VP  R
Sbjct: 1102 ----GGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGR 1157

Query: 113  KIKAPYCRICESADDTVKVNLPYGAKVLCQELFSMGISLKFETQLC 158
            KI+ PYCR+CES D+ VKVN+PYGAK+LCQELFSMGISLKFET+LC
Sbjct: 1158 KIRGPYCRVCESVDEIVKVNVPYGAKLLCQELFSMGISLKFETRLC 1203