Jatropha Genome Database

JcCB0231181.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231181.20 - phase: 1 /partial
         (133 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014157 nucleic acid binding protein, putative                  184   1e-47
27471.m000424 conserved hypothetical protein                           79   8e-16

>30170.m014157 nucleic acid binding protein, putative
          Length = 461

 Score =  184 bits (467), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/132 (69%), Positives = 100/132 (75%), Gaps = 3/132 (2%)

Query: 2   NGVGLGYIPNXXXXXXXXXXXXXXXXXXXQVKDVNYYKNLIQQHGGERQETPHQYSSRYS 61
           NG G GY+PN                   QVKD+NYYKNLIQQHGGERQE PHQY +RYS
Sbjct: 333 NGAGPGYLPNAQVPPPAVPASSVGVP---QVKDMNYYKNLIQQHGGERQEAPHQYGNRYS 389

Query: 62  HQIGSNPELVNPKSRDAKPKIMKPCIYFNSSRGCRHGANCAYQHDTSSPQRSSSIPEVQN 121
              G+N ELVNPKSR+ KPKIMKPCIYFNSSRGCRHGANCAYQHD S  QRSS+I EVQ+
Sbjct: 390 QLAGTNQELVNPKSRELKPKIMKPCIYFNSSRGCRHGANCAYQHDPSFQQRSSAISEVQS 449

Query: 122 AKRMKMDREISS 133
           AKRMK+DREISS
Sbjct: 450 AKRMKVDREISS 461


>27471.m000424 conserved hypothetical protein
          Length = 497

 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 15/107 (14%)

Query: 32  VKDVNYYKNLIQQHGGERQET------PHQYSSRYSHQIGSNPELVNPKSRDAKPKIMKP 85
           VKD+NY K+LI++HG ++         PH  +     + G N         + +PK  KP
Sbjct: 397 VKDINYIKDLIREHGSDKHNEHMSYNGPHATNHILIKEFGQN---------NLRPKFQKP 447

Query: 86  CIYFNSSRGCRHGANCAYQHDTSSPQRSSSIPEVQNAKRMKMDREIS 132
           C+Y+ S +GCR+G+NC YQHD S   ++    E   AKRMK+D EI+
Sbjct: 448 CMYYRSPKGCRNGSNCPYQHDLSFQFQTGGNLEAPYAKRMKLDGEIT 494