Jatropha Genome Database

JcCB0231181.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0231181.10 - phase: 0 
         (236 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003508 conserved hypothetical protein                          224   2e-59

>29822.m003508 conserved hypothetical protein
          Length = 128

 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/121 (87%), Positives = 111/121 (91%)

Query: 1   MLKFLSKVRIEFNALDPRIASCMEFLAQCNARKAKESNPACQVLVKRRTDDHPPQITVTF 60
           MLKFLSKV+IEFNALDPR ASC+EFLAQCNARKAKESNPACQ+LVKRRTDDHPPQITVTF
Sbjct: 1   MLKFLSKVKIEFNALDPRTASCLEFLAQCNARKAKESNPACQLLVKRRTDDHPPQITVTF 60

Query: 61  VNGVEEVFDGTKIPAQTIRTMILEKGQLLETEQMFREAGEKWPVIIPEEELHMPAPGTKV 120
           VNGVEEVFDGT + AQTIR MILEKGQ LETEQMFREAGEKWPV+IPE ELH   PGTK 
Sbjct: 61  VNGVEEVFDGTTVSAQTIRNMILEKGQSLETEQMFREAGEKWPVLIPEHELHQSFPGTKP 120

Query: 121 R 121
           R
Sbjct: 121 R 121