Jatropha Genome Database

JcCB0229931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0229931.10 + phase: 2 /partial
         (227 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29883.m001986 DNA binding protein, putative                           261   2e-70
29598.m000468 Light-inducible protein CPRF-2, putative                115   2e-26
28226.m000857 DNA binding protein, putative                            55   4e-08

>29883.m001986 DNA binding protein, putative
          Length = 441

 Score =  261 bits (666), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/204 (65%), Positives = 145/204 (71%)

Query: 24  ILGNGHGIPKAQVEADGGSLRLPALTSVQRKQEVPMRQXXXXXXXXXXXXXXXXXXXXXX 83
           + GNGHGI K Q EADGGSLRLPAL S+ RKQEVP+RQ                      
Sbjct: 150 VSGNGHGITKGQNEADGGSLRLPALPSMPRKQEVPVRQATSGSSREDSDDDELEGDTETN 209

Query: 84  XHLDPADEKRARRMQXXXXXXXXXXXXKQAQLNELEAQVGQXXXXXXXXXXXXXXINKKC 143
            ++DPADEKRARRMQ            KQAQLNELEAQVGQ              INKKC
Sbjct: 210 DNMDPADEKRARRMQSNRESARRSRRRKQAQLNELEAQVGQLRDERTSLLTRLTDINKKC 269

Query: 144 DDASVDNRILNANIETLRTKVKMAEDQVKRVTGLNPMLLARSNIPSLGMQFVAGQTDTST 203
           D+ASVDNRILNANIETLRTKVKMAEDQVKRVTGLNPM+LARSN+P++GMQFVAGQTD S 
Sbjct: 270 DEASVDNRILNANIETLRTKVKMAEDQVKRVTGLNPMVLARSNMPNMGMQFVAGQTDVSA 329

Query: 204 NVAGPMQTNNNHFFHHSVPNITSG 227
           NVA PMQ NNNHFFHHSVP++TSG
Sbjct: 330 NVAVPMQPNNNHFFHHSVPDLTSG 353


>29598.m000468 Light-inducible protein CPRF-2, putative
          Length = 453

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/195 (34%), Positives = 99/195 (50%), Gaps = 3/195 (1%)

Query: 26  GNGHGIPKAQ-VEADGGSLRLPALTSVQRKQEVPMRQXXXXXXXXXXXXXXXXXXXXXXX 84
           G GH + ++Q V+ DG S+ +P+L S  +K  VP++                        
Sbjct: 184 GAGHDVFRSQEVDVDG-SVGIPSLPSTHKKSVVPLKPTTSGSSREQSDDDENEGETELTE 242

Query: 85  HLDPADEKRARRMQXXXXXXXXXXXXKQAQLNELEAQVGQXXXXXXXXXXXXXXINKKCD 144
           ++DP D KR RRM             KQA L ELE QV Q              I+ K +
Sbjct: 243 NMDPTDAKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRVENSSLLKRLTDISHKYN 302

Query: 145 DASVDNRILNANIETLRTKVKMAEDQVKRVTGLNPMLLARSNIPSLGM-QFVAGQTDTST 203
           +++VDNR+L A++ETLR KVKMAE+ VKR+TGLN +      + ++ M  F    +DTST
Sbjct: 303 ESAVDNRVLKADVETLRAKVKMAEETVKRITGLNSLFHTIPEMSTMSMPSFDGSPSDTST 362

Query: 204 NVAGPMQTNNNHFFH 218
           + A P+Q +  H F+
Sbjct: 363 DAAVPVQDDTEHQFY 377


>28226.m000857 DNA binding protein, putative
          Length = 225

 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 43/87 (49%)

Query: 87  DPADEKRARRMQXXXXXXXXXXXXKQAQLNELEAQVGQXXXXXXXXXXXXXXINKKCDDA 146
           +P D +R RRM             KQA L ++E+QV Q                ++  DA
Sbjct: 90  NPVDIRRIRRMVSNRESARRSRKRKQAHLQDIESQVYQLSGENSSLYKQLSFATQQFRDA 149

Query: 147 SVDNRILNANIETLRTKVKMAEDQVKR 173
             +NR+L +++E LR KVK+AED V R
Sbjct: 150 DTNNRVLKSDVEALRAKVKLAEDMVTR 176