Jatropha Genome Database

JcCB0229861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0229861.10 + phase: 0 /pseudo/partial
         (429 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001662 phosphoribosylaminoimidazole carboxylase atpase-su...   602   e-173

>29680.m001662 phosphoribosylaminoimidazole carboxylase
           atpase-subunit, putative
          Length = 629

 Score =  602 bits (1553), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 283/324 (87%), Positives = 309/324 (95%), Gaps = 1/324 (0%)

Query: 106 RCGVLTVEIEHVDVATLEKLEQQGIDCQPKASTIKIIQDKYLQKVHFSRHGIPLPEFMQI 165
           RCGVLTVEIEHVDVATLEKLE++G+DCQPKA+T++IIQDKYLQKV FSRHGIPLPEFMQI
Sbjct: 140 RCGVLTVEIEHVDVATLEKLEKEGVDCQPKAATVRIIQDKYLQKVQFSRHGIPLPEFMQI 199

Query: 166 NNLEGAKKAGDLFGYPLMIKSKRLAYDGRGNAVAKSEEELSFAVAALGGFDRGLYVEKWA 225
           ++LEGAK+AGDL+GYPLMIKS+RLAYDGRGNAVAK+EE+LS AV ALGGF+RGLYVEKWA
Sbjct: 200 DDLEGAKRAGDLYGYPLMIKSRRLAYDGRGNAVAKTEEDLSSAVTALGGFERGLYVEKWA 259

Query: 226 PFVKELAVIVARGRDNSIFCYPVVETIHKENICHIVKAPADVPWKIRKLATDVAHEAVSS 285
           PF+KELAVIVARGRDNSI CYPVVETIH+ENICHIVKAPA+VPWKI+KLATDVAH+AVS 
Sbjct: 260 PFIKELAVIVARGRDNSILCYPVVETIHRENICHIVKAPANVPWKIKKLATDVAHKAVSL 319

Query: 286 LEGAGVFAVELFLTSEGQILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVVGLPLGDPS 345
           LEGAGVFAVELFLTS+G ILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVVGLPLGDPS
Sbjct: 320 LEGAGVFAVELFLTSDGLILLNEVAPRPHNSGHHTIESCYTSQFEQHLRAVVGLPLGDPS 379

Query: 346 MKTPAAIMYNLLGEDEGEPGFLLAQQLIGRALNVQGATVHWYDKPEMRKQRKMGHITITG 405
           MKTPAAIMYNLLGEDEGEPGF LA QLIG+ALN+ GA+VHWYDKPEMRKQRKMGHITI G
Sbjct: 380 MKTPAAIMYNLLGEDEGEPGFHLAHQLIGKALNIPGASVHWYDKPEMRKQRKMGHITIVG 439

Query: 406 PSMGIVEARLNSMLKEQGPDGHSA 429
            S+GIVEA+LNSMLKE+  D  SA
Sbjct: 440 ASLGIVEAKLNSMLKEEC-DSQSA 462