Jatropha Genome Database

JcCB0229331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0229331.10 - phase: 0 
         (134 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29844.m003160 N-carbamoyl-L-amino acid hydrolase, putative            221   7e-59
27942.m000154 conserved hypothetical protein                           60   2e-10

>29844.m003160 N-carbamoyl-L-amino acid hydrolase, putative
          Length = 349

 Score =  221 bits (563), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 111/132 (84%), Positives = 114/132 (86%), Gaps = 3/132 (2%)

Query: 1   MEDFSGYPIHEPFHXXXXXXXXXXXXVDDHGLQKQIDELSSFSDTPAPSVTRVLYTEKDV 60
           ME FSGYPIHE  H            VD   LQKQIDELS+FSDTPAPSVTRVLY+EKDV
Sbjct: 32  MEAFSGYPIHELSHSIASPSSLS---VDTQTLQKQIDELSAFSDTPAPSVTRVLYSEKDV 88

Query: 61  LARRYIKNLMGLSGLSVREDAVGNIFGRWDGSEPELAAVATGSHIDAIPFSGKYDGVVGV 120
           LARRYIKNLMGLSGLSVREDAVGNIFGRWDGSEPELAAVATGSHIDAIP+SGKYDGVVGV
Sbjct: 89  LARRYIKNLMGLSGLSVREDAVGNIFGRWDGSEPELAAVATGSHIDAIPYSGKYDGVVGV 148

Query: 121 LGAIEAINVLKR 132
           LGAIEAINVLKR
Sbjct: 149 LGAIEAINVLKR 160


>27942.m000154 conserved hypothetical protein
          Length = 436

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 55/97 (56%), Gaps = 1/97 (1%)

Query: 35  QIDELSSFSDTPAPSVTRVLYTEKDVLARRYIKNLMGLSGLSVREDAVGNIFGRWDGSEP 94
           +++EL+  SD+    + R   +   + A   I++ M  +GL+   D +GNI GR  GS  
Sbjct: 10  RLNELAKVSDSDG-CLERTFMSAASLKAGNLIQSWMEDAGLTTWVDHMGNIHGRVAGSNA 68

Query: 95  ELAAVATGSHIDAIPFSGKYDGVVGVLGAIEAINVLK 131
              A+  GSH+D +  +GKYDG +G++ A+ A+  LK
Sbjct: 69  SAEALLIGSHLDTVVDAGKYDGTLGIISAMSALKALK 105