Jatropha Genome Database

JcCB0229021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0229021.10 + phase: 0 /pseudo/partial
         (307 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001359 conserved hypothetical protein                           70   1e-12

>29681.m001359 conserved hypothetical protein
          Length = 440

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 15/117 (12%)

Query: 44  RLMGLDSLPDTNRIPTNGNTVTRSRSVNFMDYLFEFDLSQAHHRRVKTSLSFRDVPTLQN 103
           RLMGL SLPD         +V R+RS+N  ++  E D  + HHRRVK SLSF ++PT+  
Sbjct: 90  RLMGLQSLPDY------ATSVPRTRSLNSAEFPDEIDQMKGHHRRVK-SLSFHEMPTILE 142

Query: 104 QKNNDFFLLYLDNIEKTKKTRPNKFRKAEVGLEESNKKEEKGAVDVRKEKKNQRNNN 160
            +N  FF+L  +     KKTR +K +K+EVG  E  ++        R++ KN+ N N
Sbjct: 143 LENEQFFVLSFEKRGDDKKTR-SKEKKSEVGFGECRERR-------REKSKNKENGN 191