Jatropha Genome Database

JcCB0227741.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0227741.10 - phase: 2 /partial
         (58 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29633.m000905 succinate dehydrogenase, putative                       117   2e-27
28745.m000035 succinate dehydrogenase, putative                        66   4e-12

>29633.m000905 succinate dehydrogenase, putative
          Length = 284

 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 52/58 (89%), Positives = 57/58 (98%)

Query: 1   WISDSRDEYTNERLEAINDEFKLYRCHTILNCARACPKGLNPGKQIMNIKRLELVGGV 58
           WISDSRDEYTNERL+AINDEFKLYRCHTILNCARACPKGLNPGKQIM+IK+L++VGG 
Sbjct: 227 WISDSRDEYTNERLDAINDEFKLYRCHTILNCARACPKGLNPGKQIMHIKQLQMVGGA 284


>28745.m000035 succinate dehydrogenase, putative
          Length = 313

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 1   WISDSRDEYTNERLEAIN-DEFKLYRCHTILNCARACPKGLNPGKQIMNIKRLELVG 56
           WISDSRD++T+ERL+A+  D+ +LYRC TI NC   CPK LNP   I  +K   L+ 
Sbjct: 242 WISDSRDDFTDERLQALTEDQKRLYRCRTIKNCTATCPKSLNPADAIHKMKTKHLLS 298