Jatropha Genome Database

JcCB0226331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0226331.10 - phase: 0 /partial
         (227 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29168.m000387 cyclin d, putative                                      322   6e-89
29908.m006232 cyclin d, putative                                      127   3e-30
27749.m000345 cyclin d, putative                                      121   3e-28
29661.m000935 cyclin d, putative                                      116   9e-27
29970.m000980 cyclin d, putative                                      110   5e-25
30170.m013822 cyclin d, putative                                      103   6e-23
29801.m003121 cyclin d, putative                                      103   1e-22
30170.m013746 cyclin d, putative                                      100   5e-22
29933.m001448 cyclin d, putative                                       94   4e-20
30099.m001734 cyclin d, putative                                       91   6e-19
29568.m000279 cyclin d, putative                                       84   7e-17
30225.m001691 cyclin d, putative                                       56   1e-08

>29168.m000387 cyclin d, putative
          Length = 386

 Score =  322 bits (826), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 172/235 (73%), Positives = 178/235 (75%), Gaps = 15/235 (6%)

Query: 1   QTKGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWR 60
           Q+KGWPMQLLSVACLSLAAKMEE LVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWR
Sbjct: 152 QSKGWPMQLLSVACLSLAAKMEEPLVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWR 211

Query: 61  LRSVTPFSFLDFFACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXXXXX 120
           LRSVTPFSF+ FFACKLDSS  Y GFLISRA EIILSNMQEASFLEYWPSS         
Sbjct: 212 LRSVTPFSFIGFFACKLDSSGAYTGFLISRATEIILSNMQEASFLEYWPSSIAAAAILCA 271

Query: 121 XNEIPKLSLVNPELAESWCDGLSKE--KIISCYQ--------LMQDLVLDNSRRKPPKVL 170
            NEIP LSLVNPE AESWCDGLSKE   I +  Q        LMQDLVLDNSR+  PKVL
Sbjct: 272 ANEIPNLSLVNPEHAESWCDGLSKESKSIFNIVQNPSYPDSKLMQDLVLDNSRKTLPKVL 331

Query: 171 PLLRVTIRARMR-----XXXXXXXXXXXXXXXXXXYKRRKLNNCLWVDDDKGNSE 220
           P+LRVTIRARMR                       YKRRKLNNCLWVD+DKGNSE
Sbjct: 332 PVLRVTIRARMRSSDSSSLSSSPSLSSSSSSSSISYKRRKLNNCLWVDNDKGNSE 386


>29908.m006232 cyclin d, putative
          Length = 354

 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/169 (42%), Positives = 101/169 (59%), Gaps = 2/169 (1%)

Query: 1   QTKGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWR 60
           + K W MQLL+VACLS+AAKMEE  VP  LDLQV  ++++FE RTI+RMELLVLS L WR
Sbjct: 138 KGKDWMMQLLAVACLSIAAKMEETEVPIFLDLQVGESRFVFEARTIQRMELLVLSTLSWR 197

Query: 61  LRSVTPFSFLDFFACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXXXXX 120
           ++++TPFSF+D F  K+++       LI ++ ++ILS ++   FLE+ PS          
Sbjct: 198 MKAITPFSFIDDFLNKINNDENPPTSLILQSIQLILSIIKGIDFLEFRPSEVAAAVTIAV 257

Query: 121 XNEIPKLSLVNPELAESWCDGLSKEKIISCYQLMQDLVLDNSRRKPPKV 169
             EI  +         S    + KEK++ C+QL+QD  L     K   V
Sbjct: 258 VGEIRTVDAEQAIFVLS--QHIQKEKVLKCFQLIQDFSLIGGAIKDTNV 304


>27749.m000345 cyclin d, putative
          Length = 366

 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 3/157 (1%)

Query: 3   KGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLR 62
           K W MQLL+VACLSLAAKMEE  VP  +DLQV   K++FE +TI+RMELLVLS L WR++
Sbjct: 139 KAWTMQLLAVACLSLAAKMEETNVPLSVDLQVGEPKFVFEAKTIQRMELLVLSTLKWRMQ 198

Query: 63  SVTPFSFLDFFACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXXXXXXN 122
           S+TP SF+D++  K+  +      L++R+ ++ILS ++   FLE+ PS            
Sbjct: 199 SLTPCSFIDYYLAKIRGNQHLSTSLVTRSLQLILSIIKCIDFLEFRPSEIAAAVAIFVLG 258

Query: 123 EIPKLSLVNPELAESWCDGLSKEKIISCYQLMQDLVL 159
           E+  + +     A      + +E+++ C +L++DL L
Sbjct: 259 EVQAVDVYK---AMPCFTHVEEERVLKCVELIKDLSL 292


>29661.m000935 cyclin d, putative
          Length = 306

 Score =  116 bits (290), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 101/158 (63%), Gaps = 8/158 (5%)

Query: 1   QTKGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWR 60
           Q KGWPMQLL+VACLS+AAK+EE  VP LL+LQ+   +++F+P TI+RMELLV++ L WR
Sbjct: 117 QGKGWPMQLLAVACLSVAAKLEETNVPLLLELQILEPRFLFKPSTIQRMELLVMAKLKWR 176

Query: 61  LRSVTPFSFLDFFACKLDSSS---TYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXX 117
           L  +TPF FL +F  KL  +S        +  R+ ++I++  +  +FL+Y PS+      
Sbjct: 177 LHIITPFYFLHYFIAKLSCASPDCNNFSSVFPRSSDLIINICRVINFLDYTPSAVAASAV 236

Query: 118 XXXXNEIPKLSLVNPELAESWCDGLSKEKIISCYQLMQ 155
               N+    ++ +P+L E   + ++++K+  CY L++
Sbjct: 237 LWVTNQ----TVDDPKL-ECLHEKVNRDKVKRCYNLVK 269


>29970.m000980 cyclin d, putative
          Length = 276

 Score =  110 bits (275), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 95/170 (55%), Gaps = 3/170 (1%)

Query: 3   KGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLR 62
           K W  QL +VACLSLAAK+EE  VP LLDLQVE AKY+FE +TI+RMELL LS L WR+ 
Sbjct: 45  KPWMGQLAAVACLSLAAKVEETQVPLLLDLQVEEAKYVFEAKTIKRMELLALSTLQWRMN 104

Query: 63  SVTPFSFLDFFACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXXXXXXN 122
            +TP SF D    +L   +      + R + ++LS + ++ F+ Y PS            
Sbjct: 105 PITPISFFDHIIRRLGLKNHLHWEFLRRCESLLLSVISDSRFMSYLPSVLATAIMLHVIK 164

Query: 123 EIPKLSLVNPELAESWCDGLSKEKIISCYQLMQDLVLDNS---RRKPPKV 169
           E+   + V  +        +S+ K+  CY+L+ +L  + +   +RK P +
Sbjct: 165 EVEPCNQVQYQNQLMSVIKISENKVNECYKLILELSGNQNKSCKRKHPSM 214


>30170.m013822 cyclin d, putative
          Length = 378

 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 73/122 (59%)

Query: 3   KGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLR 62
           K W  QL +VACLSLAAK+EE  VP LLDLQVE +KY+FE +TI+RME+LVLS L WR+ 
Sbjct: 150 KPWMTQLAAVACLSLAAKVEETQVPLLLDLQVEDSKYVFEAKTIQRMEILVLSTLQWRMN 209

Query: 63  SVTPFSFLDFFACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXXXXXXN 122
            VTP SF D+   +L   +      + R + I+LS + +   + Y PS           N
Sbjct: 210 PVTPLSFFDYVTRRLGLKNYICWEFLRRCELIVLSIISDTRCMRYLPSVIAAAAMLHVIN 269

Query: 123 EI 124
            I
Sbjct: 270 SI 271


>29801.m003121 cyclin d, putative
          Length = 395

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/156 (39%), Positives = 90/156 (57%), Gaps = 1/156 (0%)

Query: 3   KGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLR 62
           K W +QL++V CLS+AAK+EE  VP LLDLQVE  KY+FE +TI+RMELLVLS L W++ 
Sbjct: 161 KPWMIQLVAVTCLSIAAKVEETQVPLLLDLQVEDTKYVFEAKTIQRMELLVLSALKWKMH 220

Query: 63  SVTPFSFLDFFACKLDSSSTYIGFLISRAKEIILSNMQEA-SFLEYWPSSXXXXXXXXXX 121
            VTP SFLD    +L   +      + R + ++L+ +      + Y PS           
Sbjct: 221 PVTPLSFLDHIIRRLGLKNHLHWEFLRRCERLLLTVVSVIYXXISYLPSVLATATMMYVI 280

Query: 122 NEIPKLSLVNPELAESWCDGLSKEKIISCYQLMQDL 157
           +++   + V+ +        LSKEK+  CY+L+ +L
Sbjct: 281 DQVEPFNPVDYQNQLLGVLKLSKEKVNDCYELILEL 316


>30170.m013746 cyclin d, putative
          Length = 327

 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 91/164 (55%), Gaps = 13/164 (7%)

Query: 3   KGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLR 62
           K W ++LLSVACLSLAAKMEE  VP L + Q+E  +Y FE + I+RMELLVL+ L+WR+ 
Sbjct: 114 KSWAVKLLSVACLSLAAKMEEIKVPPLSNFQIE--EYNFESKVIQRMELLVLNTLEWRMI 171

Query: 63  SVTPFSFLDFFACKLDSSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXXXXXXN 122
           S TPF+FL +F  K          L+SR   +I + ++E + +E+ PS           +
Sbjct: 172 SSTPFAFLHYFIIKFSKEPPPSRHLVSRTVGLIFAVVKEITSMEHRPSVIAAAAALMSLD 231

Query: 123 EIPKLSLVNPELAESWCDGLSK------EKIISCYQLMQDLVLD 160
                +L+   L E   D +S       E +  CY LMQ L ++
Sbjct: 232 R----NLIRKAL-ECKIDSISPSGFLEIEDVFQCYSLMQKLEME 270


>29933.m001448 cyclin d, putative
          Length = 305

 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 3/159 (1%)

Query: 1   QTKGWPMQLLSVACLSLAAKMEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWR 60
           Q K W ++LL+++CLSLAAKM++   P L +LQ E + + F+ +T+ RMELL+L  L+WR
Sbjct: 89  QGKPWLLRLLAISCLSLAAKMKDTHFP-LSNLQREES-FNFDMQTVSRMELLILGALNWR 146

Query: 61  LRSVTPFSFLDFFACKLD-SSSTYIGFLISRAKEIILSNMQEASFLEYWPSSXXXXXXXX 119
           +RS+TPFSFL FF    +         L  RA EII     E   LE+ PS         
Sbjct: 147 MRSITPFSFLHFFISLFELKDPPLTQALKDRATEIIFKAHHEIKLLEFRPSVIAASALLV 206

Query: 120 XXNEIPKLSLVNPELAESWCDGLSKEKIISCYQLMQDLV 158
             +E+  L   + + +   C+ ++KE ++ C   +Q +V
Sbjct: 207 ASHELFPLQYPSFKCSIFSCECVNKENLLRCLNALQQMV 245


>30099.m001734 cyclin d, putative
          Length = 208

 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/147 (39%), Positives = 84/147 (57%), Gaps = 9/147 (6%)

Query: 21  MEEALVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRLRSVTPFSFLDFFACKLDSS 80
           MEE  VP LLDLQV    +IFEP+TI+RMEL V+S L+WRLRSVTPF +LD+F  +L S+
Sbjct: 1   MEEMDVPLLLDLQVLEPGFIFEPKTIQRMELHVMSNLNWRLRSVTPFDYLDYFISRLPSN 60

Query: 81  STY----IGFLISRAKEIILSNMQEASFLEYWPSS--XXXXXXXXXXNEIPKLSLVNPEL 134
           S         + +   ++ILS  +   FL +  S+             E  +   +N EL
Sbjct: 61  SCPEPDDYSRVFTACSDLILSTTRVIDFLGFTASTIAAAAVLCAAGAGESLETPAINEEL 120

Query: 135 AESWCDGLSKEKIISCYQLMQDLVLDN 161
              +   ++KE + SC+QLMQ+ ++D 
Sbjct: 121 ---FHKRINKEMVRSCHQLMQEYLIDT 144


>29568.m000279 cyclin d, putative
          Length = 349

 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 89/166 (53%), Gaps = 8/166 (4%)

Query: 3   KGWPMQLLSVACLSLAAKMEEA-LVPSLLDLQVEGAKYIFEPRTIRRMELLVLSVLDWRL 61
           K W ++LLSVACLS+A+K  E+   PSLL++Q+E   + F+  TI+RMEL++L  L WRL
Sbjct: 119 KNWMVELLSVACLSVASKFSESTYAPSLLEIQMEDMDHTFQSITIQRMELMLLQALGWRL 178

Query: 62  RSVTPFSFLDFFACKLDSSSTYI------GFLISRAKEIILSNMQEASFLEYWPSSXXXX 115
            S T +S+++     +  ++ ++        +++R  E+IL  + +  F E+ PS     
Sbjct: 179 GSTTVYSYVELMMMMMVINNDFLKSHLRKDLIVARVTELILGTILDCKFAEFRPSIAAVS 238

Query: 116 XXXXXXNE-IPKLSLVNPELAESWCDGLSKEKIISCYQLMQDLVLD 160
                  E IP  +         + +   K+ I+ C+ +++  ++D
Sbjct: 239 AIWCGLEELIPSKTSTQLTYITGFLNKDQKDDIVKCHNILEQKLID 284


>30225.m001691 cyclin d, putative
          Length = 144

 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 49  MELLVLSVLDWRLRSVTPFSFLDFFACKLDSSSTYIG-----FLISRAKEIILSNMQEAS 103
           ME L+L  L WR+RSVTPFSF+ FF     S S +        L +RA EIIL    +  
Sbjct: 1   MEELILGALKWRMRSVTPFSFISFFI----SLSKFKDPPLRQALKARAIEIILKAQDDIR 56

Query: 104 FLEYWPSSXXXXXXXXXXNEIPKLSLVNPELAESWCDGLSKEKIISCYQLMQDLVL 159
            L++  S           +E+  L     + A   C  + KE +  CY L+QD+ +
Sbjct: 57  ILKFKASVIAASALLNASHELFALQFSCFKKALCHCSYVHKEDMFECYDLVQDITM 112