Jatropha Genome Database

JcCB0224951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224951.10 - phase: 0 /partial
         (205 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30078.m002318 isocitrate dehydrogenase, putative                      381   e-106
29628.m000748 isocitrate dehydrogenase, putative                      212   9e-56
28506.m000056 Tartrate dehydrogenase, putative                         68   4e-12

>30078.m002318 isocitrate dehydrogenase, putative
          Length = 364

 Score =  381 bits (978), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 179/193 (92%), Positives = 187/193 (96%)

Query: 1   VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
           VF+ AEVPI WEEHYVG +IDPRT+SFLTWESLESVRRN+VGLKGPMATPIGKGHRSLNL
Sbjct: 55  VFKEAEVPIEWEEHYVGDQIDPRTQSFLTWESLESVRRNRVGLKGPMATPIGKGHRSLNL 114

Query: 61  TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
           TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT
Sbjct: 115 TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 174

Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
           RQASLRVAEYAFHYAK HGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI
Sbjct: 175 RQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 234

Query: 181 DNCCMMVCESLSL 193
           DNCCMM+ ++ +L
Sbjct: 235 DNCCMMLVKNPAL 247


>29628.m000748 isocitrate dehydrogenase, putative
          Length = 372

 Score =  212 bits (540), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 141/187 (75%), Gaps = 5/187 (2%)

Query: 1   VFRAAEVPIVWEEHYVGTEIDPRTESFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 60
           V  A   P+ +E + V  ++       +  E +ES+++NKV LKG +ATP+G G  SLN+
Sbjct: 64  VMEAMHAPVYFERYEVHGDMKK-----VPAEVIESIKKNKVCLKGGLATPMGGGVSSLNV 118

Query: 61  TLRKELNLYANVRPCYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIIT 120
            LRKEL+LYA++  C++LPG  TR+++V+++ IRENTEGEYSGLEH+VV GVVESLK+IT
Sbjct: 119 QLRKELDLYASLVNCFNLPGLPTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVIT 178

Query: 121 RQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIKYEEVVI 180
           +  S R+A+YAF YA  + R++V+A+HKANIM+  DGLFL+ CREVA KYP IKY E+++
Sbjct: 179 KFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIV 238

Query: 181 DNCCMMV 187
           DNCCM +
Sbjct: 239 DNCCMQL 245


>28506.m000056 Tartrate dehydrogenase, putative
          Length = 359

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 69/134 (51%), Gaps = 9/134 (6%)

Query: 60  LTLRKELNLYANVRPCYSLPGYK-----TRYDDVNLITIRENTEGEYSGLEHQVVRG--- 111
           L  R+E + Y N+RP   +PG        +  D++   +RENTEGEYS +  ++  G   
Sbjct: 93  LKFRREFDQYVNLRPVRLMPGVPCPLAGKKPSDIDFYVVRENTEGEYSSVGGRIFAGTDR 152

Query: 112 -VVESLKIITRQASLRVAEYAFHYAKAHGRERVSAIHKANIMQKTDGLFLKCCREVAEKY 170
            VV    + +R    R+ ++A+  A +  ++ +++  K+N +  +   + +   E+   Y
Sbjct: 153 EVVLQESVFSRHGVDRIVKFAYELANSRPKKHLTSATKSNGISISMPFWDERVAEIGASY 212

Query: 171 PEIKYEEVVIDNCC 184
           P++K+++  ID  C
Sbjct: 213 PDVKWDKYHIDILC 226