Jatropha Genome Database

JcCB0224701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0224701.10 + phase: 2 /partial
         (223 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011273 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synth...   190   6e-49

>30190.m011273 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
           synthase, putative
          Length = 230

 Score =  190 bits (482), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 109/199 (54%), Positives = 112/199 (56%), Gaps = 45/199 (22%)

Query: 25  MATHLYTSYSPXXXXXXXXXXXXXXXXXXPLLSRHGKAIASPXXXXXXXXXXISAVAGTT 84
           MATHL TSYSP                  PL  R+ K    P          ISAVAG T
Sbjct: 1   MATHLCTSYSPITTSKITNNNNNKVLSL-PLKPRNAKGTTFPLSLRTSTRLSISAVAGNT 59

Query: 85  VVQVDALATSSKGPKSLPFRVGHGFDLHRLEPGYPLIIGGINVPHDRGCEAHSDGDVLLH 144
            VQVD   TS                                             DVLLH
Sbjct: 60  AVQVDGPTTSR--------------------------------------------DVLLH 75

Query: 145 CVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIQEAVRLMHEAGYDIGNLDATLILQR 204
           CVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFI+EAVRLMHEAGYDIGNLDATLILQR
Sbjct: 76  CVVDAILGALGLPDIGQIFPDSDPKWKGAPSSVFIKEAVRLMHEAGYDIGNLDATLILQR 135

Query: 205 PKLSPHKEAIRENLCKLLG 223
           PKLSPHKEAIR NLC+LLG
Sbjct: 136 PKLSPHKEAIRSNLCELLG 154