Jatropha Genome Database

JcCB0220081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0220081.10 - phase: 0 /partial
         (296 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28076.m000417 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha...   478   e-135

>28076.m000417 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase,
           putative
          Length = 716

 Score =  478 bits (1230), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/265 (89%), Positives = 241/265 (90%)

Query: 1   DLATVDSILLRELPPVEDSDARLALKRLIDISMGVITPLSEQLTKPLPNAMVLVNLKEIA 60
           DLATVDSILLRELPP EDSDARLALKRLIDISMGVITPLSEQLTKPLPNAMVLVNLKE++
Sbjct: 447 DLATVDSILLRELPPAEDSDARLALKRLIDISMGVITPLSEQLTKPLPNAMVLVNLKELS 506

Query: 61  TGAYKLLPEGTRLVVSVRGDESYEELEILKDIDATMILHDLPFTEDKIGRVHAARRLFEF 120
           TGA+KLLPEGTRLVVSVRGDE YEELEILK IDATMILHDLP TEDKIGRVHAARRLFEF
Sbjct: 507 TGAHKLLPEGTRLVVSVRGDEPYEELEILKQIDATMILHDLPNTEDKIGRVHAARRLFEF 566

Query: 121 LSDHALNFPVIHHIQFPNAIHRDDLVIGAGTNXXXXXXXXXXXXXXXEAPGQDFDFLRNT 180
           LSD++LNFPVIHHI FPN IHRDDLVIGAG N               EAP QDFDFLRNT
Sbjct: 567 LSDNSLNFPVIHHINFPNGIHRDDLVIGAGANAGALLVDGLGDGILLEAPDQDFDFLRNT 626

Query: 181 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPG 240
           SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPG
Sbjct: 627 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPG 686

Query: 241 EMADADFGYVGGAPGKIDLYVGKTV 265
           EMADADFGYVGGAPGKIDLYVGK V
Sbjct: 687 EMADADFGYVGGAPGKIDLYVGKRV 711