Jatropha Genome Database

JcCB0217351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0217351.10 + phase: 0 /partial
         (158 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29496.m000135 zinc finger protein, putative                           237   2e-63
27506.m000051 zinc finger protein, putative                            93   5e-20
29848.m004493 Salt-tolerance protein, putative                         87   4e-18
28207.m000104 transcription factor, putative                           50   3e-07

>29496.m000135 zinc finger protein, putative
          Length = 378

 Score =  237 bits (604), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 122/163 (74%), Positives = 129/163 (79%), Gaps = 8/163 (4%)

Query: 1   VQCLE-AGKDQMINHHQQYRNFQLGLEFDSSKPTYSYNGS----VSISSMDVGVVQDSTM 55
           V+C + AGKD +   HQQY NFQLGLEF+SSK  YSYNGS    VSIS MDVGVV DSTM
Sbjct: 219 VRCGDGAGKDHV---HQQYHNFQLGLEFESSKAAYSYNGSISHSVSISPMDVGVVPDSTM 275

Query: 56  SEISISHSRTPKGTIDLFSGPPMQMPSQLSPRDREARVLRYXXXXXXXXXXXXIRYASRK 115
           SE SISH R PKGTIDLFSGPP+QMPSQLSPRDREARVLRY            IRYASRK
Sbjct: 276 SEASISHPRPPKGTIDLFSGPPIQMPSQLSPRDREARVLRYREKKKTRKFEKTIRYASRK 335

Query: 116 AYAETRPRIKGRFAKRTDVDFEVDQMFSTTLMTETGYSIVPSF 158
           AYAETRPRIKGRFAKRTDV+ EVDQ+FST LM ETGY IVPSF
Sbjct: 336 AYAETRPRIKGRFAKRTDVEVEVDQIFSTALMAETGYGIVPSF 378


>27506.m000051 zinc finger protein, putative
          Length = 388

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 64/138 (46%), Positives = 83/138 (60%), Gaps = 14/138 (10%)

Query: 32  PTYSYNGSVSISSMDVGVVQD-STMSEISISHSRT------PKGTIDLFSGPPMQMPSQL 84
           PT S + SVS SS+DVGVV D S+ S+IS    R       P G I   SG      +Q+
Sbjct: 254 PTQSLSQSVSSSSLDVGVVPDGSSTSDISYPFGRNMNTCTDPSGPI---SGNSTNQAAQM 310

Query: 85  SPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRTDVDFEVDQMF-- 142
              +REARVLRY            IRYASRKAYAETRPRIKGRFAKRT++D ++D+++  
Sbjct: 311 CGINREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDTDMDRLYNS 370

Query: 143 --STTLMTETGYSIVPSF 158
             S + + +  Y +VP+F
Sbjct: 371 PSSVSYLGDAQYGVVPTF 388


>29848.m004493 Salt-tolerance protein, putative
          Length = 332

 Score = 86.7 bits (213), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/86 (54%), Positives = 53/86 (61%), Gaps = 5/86 (5%)

Query: 73  FSGPPMQMPSQLSPRDREARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRT 132
           +S   M+   QLS  DREARVLRY            IRYASRKAYAETRPRIKGRFAKRT
Sbjct: 252 YSKSTMESVQQLSAVDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 311

Query: 133 DVDFEVDQMFSTTLMTETGYSIVPSF 158
           D+D E D+  S        + +VPSF
Sbjct: 312 DIDVEADRSSSI-----NAFGVVPSF 332


>28207.m000104 transcription factor, putative
          Length = 430

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/44 (56%), Positives = 26/44 (59%)

Query: 89  REARVLRYXXXXXXXXXXXXIRYASRKAYAETRPRIKGRFAKRT 132
           REARVLRY            IRY  RK  AE RPR+KGRF KRT
Sbjct: 375 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 418