Jatropha Genome Database

JcCB0216831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0216831.10 + phase: 0 /pseudo/partial
         (249 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014113 conserved hypothetical protein                          346   6e-96

>30147.m014113 conserved hypothetical protein
          Length = 314

 Score =  346 bits (887), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 169/247 (68%), Positives = 189/247 (76%), Gaps = 3/247 (1%)

Query: 3   LKMARVVKNWWSHSKTVVLIWSVCIIVSFSLLQLALKXXXXXXXXXXXXXXXXXMEQRSR 62
           +   R++KNWWSHSKTV LIWS C+I+S S+LQLALK                 MEQRS+
Sbjct: 1   MGTTRMLKNWWSHSKTVTLIWSFCVIISISILQLALKNSPSQNYPSSSSDSLSNMEQRSK 60

Query: 63  LYDKMARDLDEKGPTFLEHGETSQSLSLSDLFILKDGSLTPVLKAANPPVRANVLYMSPE 122
           LYDKMARDLD+ GP+FL+HG+TSQSLSLSD+F LKDGS+TPVLKAANPPVRANVLY+S E
Sbjct: 61  LYDKMARDLDDNGPSFLKHGQTSQSLSLSDIFTLKDGSVTPVLKAANPPVRANVLYLSSE 120

Query: 123 YSVPISETVKHIFHPYFDQAIWFQNSSLYHFSMFHASHHILPVPXXXXXXXXXXXXXXXX 182
           YSV ISE VK IF PYFD+AIWFQNSS+YHFSMFHASHHI PVP                
Sbjct: 121 YSVRISEAVKRIFSPYFDKAIWFQNSSVYHFSMFHASHHIGPVPATEDEVEAEASAVGSV 180

Query: 183 XXGLCPLKIVLDRVVLTSTGVLLGCWQVISGPDPITIRSKLRTALPHAPEKQLVKN---H 239
             GLCPL+IVLDRVVLTSTGVLLGCWQVISGPDPITIR+KLRTALPHAPEKQL      H
Sbjct: 181 AEGLCPLEIVLDRVVLTSTGVLLGCWQVISGPDPITIRAKLRTALPHAPEKQLYDAAILH 240

Query: 240 VNFLFML 246
            +F  +L
Sbjct: 241 TSFARLL 247