Jatropha Genome Database

JcCB0216511.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0216511.10 - phase: 0 
         (67 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29844.m003244 5-methyltetrahydrofolate:homocysteine methyltransf...   119   4e-28
29703.m001481 5-methyltetrahydrofolate:homocysteine methyltransf...    95   6e-21
27524.m000295 5-methyltetrahydrofolate:homocysteine methyltransf...    79   4e-16

>29844.m003244 5-methyltetrahydrofolate:homocysteine
          methyltransferase, putative
          Length = 348

 Score =  119 bits (297), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/66 (84%), Positives = 60/66 (90%), Gaps = 1/66 (1%)

Query: 1  MGLESVD-TSSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRK 59
          MGLE+ D T SFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVR+
Sbjct: 1  MGLENQDMTRSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRR 60

Query: 60 VLYSFL 65
          V   ++
Sbjct: 61 VHLDYI 66


>29703.m001481 5-methyltetrahydrofolate:homocysteine
          methyltransferase, putative
          Length = 343

 Score = 95.1 bits (235), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 50/59 (84%)

Query: 7  DTSSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKVLYSFL 65
          + SS M+DFL++ GG AVIDGG ATELERHGADLNDPLWSAKCL++SPHL+R V   +L
Sbjct: 8  NPSSLMTDFLKQSGGVAVIDGGLATELERHGADLNDPLWSAKCLLTSPHLIRMVHLDYL 66


>27524.m000295 5-methyltetrahydrofolate:homocysteine
          methyltransferase, putative
          Length = 327

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/65 (55%), Positives = 46/65 (70%), Gaps = 2/65 (3%)

Query: 1  MGLESVDTSSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRKV 60
          MG+E     S + D ++K GG AVIDGGFAT+LE HGA +NDPLWSA CLI  P L+++V
Sbjct: 1  MGVEK--RRSLLEDLIEKAGGCAVIDGGFATQLETHGAAINDPLWSALCLIKDPELIKRV 58

Query: 61 LYSFL 65
             +L
Sbjct: 59 HLEYL 63