Jatropha Genome Database

JcCB0215961.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0215961.20 + phase: 2 /partial
         (314 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008586 DNA replication licensing factor MCM2, putative         590   e-169
29693.m002033 DNA replication licensing factor MCM3, putative         153   1e-37
29737.m001249 DNA replication licensing factor MCM5, putative         139   2e-33
29805.m001487 DNA replication licensing factor MCM8, putative         138   3e-33
30131.m007101 DNA replication licensing factor MCM4, putative         126   1e-29
27967.m000046 minichromosome maintenance protein, putative            126   1e-29
29806.m000936 Minichromosome maintenance protein MCM, putative        115   2e-26
30076.m004661 DNA replication licensing factor MCM7, putative         109   2e-24

>30128.m008586 DNA replication licensing factor MCM2, putative
          Length = 930

 Score =  590 bits (1520), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 290/314 (92%), Positives = 300/314 (95%), Gaps = 2/314 (0%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
           VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANP+GGRYDSSKTF+QNVELTDPIISRF
Sbjct: 618 VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPVGGRYDSSKTFSQNVELTDPIISRF 677

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
           DILCVVKDVVDPVADEMLAKFVVDSHF+SQPKG N DD  LSESQED  ASARP DPEIL
Sbjct: 678 DILCVVKDVVDPVADEMLAKFVVDSHFRSQPKGGNTDD--LSESQEDILASARPVDPEIL 735

Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVPIAVRHIESMIRMSE 180
           PQDLLKKY+TYAKLNVFPRLHDSDMEKL QVYAELRRESS GQGVPIAVRHIESMIRMSE
Sbjct: 736 PQDLLKKYLTYAKLNVFPRLHDSDMEKLTQVYAELRRESSRGQGVPIAVRHIESMIRMSE 795

Query: 181 SHARMHLRQHVTEEDVDVAIRVLLNSFISTQKYGVQRALQKSFRKYITYKMDYNRMLLNL 240
           +HARMHLRQHVTEEDVD+AIRVLLNSFISTQKYGVQRALQKSFRKYITYKMDYNRMLLNL
Sbjct: 796 AHARMHLRQHVTEEDVDMAIRVLLNSFISTQKYGVQRALQKSFRKYITYKMDYNRMLLNL 855

Query: 241 LQELVNRALRFEEIITGSISGLSHIDVKVEDLRIMAEERGISDLNPFFSSTDFSAANFEL 300
           LQELVNRALRFEEII+GSISGLSHIDVKVEDLR MAEERGISDL+PFF+S DF AANFEL
Sbjct: 856 LQELVNRALRFEEIISGSISGLSHIDVKVEDLRNMAEERGISDLSPFFTSNDFLAANFEL 915

Query: 301 DNVRQVIKHHLPRQ 314
           DN RQVIKH LPR+
Sbjct: 916 DNDRQVIKHRLPRR 929


>29693.m002033 DNA replication licensing factor MCM3, putative
          Length = 769

 Score =  153 bits (386), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/225 (40%), Positives = 133/225 (59%), Gaps = 22/225 (9%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
           V+IHE MEQQ+++I+KAGI  SL ARCSV+AAANPI G YD S T T+N+ L D ++SRF
Sbjct: 409 VAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRF 468

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSH-FKSQPKG--ANIDDRSLSESQEDAQASARPF-- 115
           D+L +V D +DP  D  +++ V+  H ++S   G    +D  +    +E+A A +  F  
Sbjct: 469 DLLFIVLDQMDPDIDRQISEHVLRMHRYRSATDGGEGTLDGGARYGREEEADADSSVFVK 528

Query: 116 --------------DPEILPQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESS- 160
                           + L    LKKYI YAK  + P L D   E++   YAELR  SS 
Sbjct: 529 YNRMLHGKKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLSDEASEQIATAYAELRSSSST 588

Query: 161 --HGQGVPIAVRHIESMIRMSESHARMHLRQHVTEEDVDVAIRVL 203
              G  +PI  R +E++IR+S +HA++ L + V++ DV+ A++VL
Sbjct: 589 AKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVEAALKVL 633


>29737.m001249 DNA replication licensing factor MCM5, putative
          Length = 723

 Score =  139 bits (350), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 125/224 (55%), Gaps = 27/224 (12%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
           V+IHEAMEQQ+ISI+KAGI T L +R SV+AAANP  GRYD  KT  +N++L   I+SRF
Sbjct: 450 VAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQENIDLQTTILSRF 509

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
           D++ +VKD  D + D+++A  ++  H  +    A+I  R   E                 
Sbjct: 510 DLIFIVKDRRDYIRDKIIASHIIKVHASADAASADI--RVAKE----------------- 550

Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRR-------ESSHGQGVPIAVRHIE 173
            ++ LK+YI Y +    PRL +S   +L+  Y + R+       E+     VPI VR +E
Sbjct: 551 -ENWLKRYIQYCRTECHPRLSESASNRLQNEYVKFRQDMRKQANETGEATAVPITVRQLE 609

Query: 174 SMIRMSESHARMHLRQHVTEEDVDVAIRVLLNSFISTQKYGVQR 217
           ++IR+SE+ A+M L    TE DV  A+ +   S I   + G+ +
Sbjct: 610 AIIRLSEALAKMKLSHVATEADVIEAVNLFKVSTIEAAQCGINQ 653


>29805.m001487 DNA replication licensing factor MCM8, putative
          Length = 757

 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 120/206 (58%), Gaps = 22/206 (10%)

Query: 2   SIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFD 61
           ++ EAMEQQ +S++KAG++ SL AR SV+AAANP+GG Y+ +KT  +N++++  ++SRFD
Sbjct: 476 ALLEAMEQQCVSVAKAGLLASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD 535

Query: 62  ILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEILP 121
           ++ ++ D  D V D+ ++  ++    + +P                     R  D   LP
Sbjct: 536 LVFILLDKPDEVLDKQVSDHIMS--LRLEP--------------------TRDVDFAPLP 573

Query: 122 QDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVPIAVRHIESMIRMSES 181
             LL+KYI YA+  VFPR+     E L++ Y  LR  ++   G PI  R +ES++R++E+
Sbjct: 574 GPLLRKYIAYARTYVFPRMSRPAAEILQKFYLRLRDHNTSADGTPITARQLESLVRLAEA 633

Query: 182 HARMHLRQHVTEEDVDVAIRVLLNSF 207
            AR+ LR+ +T +D    + ++  S 
Sbjct: 634 RARLELREEITAQDAMDVVEIMKESL 659


>30131.m007101 DNA replication licensing factor MCM4, putative
          Length = 867

 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/205 (37%), Positives = 113/205 (55%), Gaps = 26/205 (12%)

Query: 3   IHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFDI 62
           +HE MEQQ+ISI+KAGI+ SL AR SV+A ANPIG RY+   +   N+ L   ++SRFD+
Sbjct: 584 LHEVMEQQTISIAKAGIIASLNARTSVLACANPIGSRYNPRLSVIDNIHLPPSLLSRFDL 643

Query: 63  LCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEILPQ 122
           + ++ D  D   D  LAK +V  HF               E+ E AQ +       +L  
Sbjct: 644 IYLILDKADEQTDRHLAKHIVSLHF---------------ENPESAQHN-------VLDI 681

Query: 123 DLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRE----SSHGQGVPIAVRHIESMIRM 178
             L  Y++YA+ ++ P+L D   E+L + Y E+RR      S  + +    R IES+IR+
Sbjct: 682 ATLTAYLSYARKHIHPKLSDEAAEELTRGYVEMRRRGNFPGSSKKVITATPRQIESLIRL 741

Query: 179 SESHARMHLRQHVTEEDVDVAIRVL 203
           SE+ AR+   + V + DV  A R+L
Sbjct: 742 SEALARIRFSEWVEKHDVIEAFRLL 766


>27967.m000046 minichromosome maintenance protein, putative
          Length = 713

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/214 (40%), Positives = 119/214 (55%), Gaps = 27/214 (12%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
           V+IHEAMEQQ+ISI+KAGI  +L AR S++AAANP GGRYD SK    NV L   I+SRF
Sbjct: 347 VAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRF 406

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
           D++ V+ D  D   D  +A  +V  H K                +E+A A A        
Sbjct: 407 DLVYVMIDDPDDQVDYHIAHHIVRVHQK----------------REEALAPA-------F 443

Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRR-ESSHGQGVP--IAVRHIESMIR 177
               LK+YI YAK  + P+L+    + L   Y  LR+ +++ G  V   + VR +E++IR
Sbjct: 444 TTAQLKRYIAYAK-TLKPKLNSEARKLLVDSYVALRKGDTTPGSRVAYRMTVRQLEALIR 502

Query: 178 MSESHARMHLRQHVTEEDVDVAIRVLLNSFISTQ 211
           +SE+ AR HL   V    V +A+R+L  S IS +
Sbjct: 503 LSEAIARSHLENQVQPRHVRLAVRLLKTSIISVE 536


>29806.m000936 Minichromosome maintenance protein MCM, putative
          Length = 644

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 113/212 (53%), Gaps = 27/212 (12%)

Query: 2   SIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRFD 61
           +IHEAMEQQ+IS++KAG+VT+L  R  V  A NP  G+YD  +T + N  L+ P++SRFD
Sbjct: 432 TIHEAMEQQTISVAKAGLVTTLSTRTIVFGATNP-KGQYDPYQTLSVNTALSGPLLSRFD 490

Query: 62  ILCVVKDVVDPVADEMLAKFVVDSHF---KSQPKGANIDDRSLSESQEDAQASARPFDPE 118
           I+ V+ D  +P  D      VV SH    K   KG   DD +                  
Sbjct: 491 IVLVLLDTKNPEWDA-----VVSSHILAEKESGKGNENDDLA-----------------N 528

Query: 119 ILPQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVPIAVRHIESMIRM 178
           I    +L++YI + K   F  +  ++ EK+   Y +L+R S+        VR +ES+IR+
Sbjct: 529 IWTLAMLRRYIHFVK-GYFKPILTTEAEKIISSYYQLQRRSATDNAARTTVRMLESLIRL 587

Query: 179 SESHARMHLRQHVTEEDVDVAIRVLLNSFIST 210
           +++HAR+  R  VT  D  +AI  + +S  ++
Sbjct: 588 AQAHARLMFRNEVTTLDAIMAILCIESSMTTS 619


>30076.m004661 DNA replication licensing factor MCM7, putative
          Length = 718

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 112/206 (54%), Gaps = 26/206 (12%)

Query: 1   VSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFTQNVELTDPIISRF 60
            +IHE MEQQ++SI+KAGI TSL AR +V+AAANP  GRYD  +T  +N+ L   ++SRF
Sbjct: 451 TAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRF 510

Query: 61  DILCVVKDVVDPVADEMLAKFVVDSHFKSQPKGANIDDRSLSESQEDAQASARPFDPEIL 120
           D+L ++ D  D  +D  +A+ VV  H                +++E       P +P I 
Sbjct: 511 DLLWLILDRADMDSDLEMARHVVYVH----------------QNKESPALGFTPLEPSI- 553

Query: 121 PQDLLKKYITYAKLNVFPRLHDSDMEKLKQVYAELRRESSHGQGVP---IAVRHIESMIR 177
               L+ YI+ A+  + P +     E +   Y+ +R+E +     P     VR + S++R
Sbjct: 554 ----LRAYISAAR-RLSPYVPKELEEYIASAYSSIRQEEAKSN-TPHSYTTVRTLLSILR 607

Query: 178 MSESHARMHLRQHVTEEDVDVAIRVL 203
           +S + AR+   + V + DVD A+R++
Sbjct: 608 ISAALARLRFSETVAQSDVDEALRLM 633