Jatropha Genome Database

JcCB0213661.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0213661.20 - phase: 2 /pseudo/partial
         (396 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28644.m000943 ATP-dependent RNA helicase, putative                    252   3e-67
30170.m013734 ATP-dependent RNA helicase, putative                    128   5e-30
27632.m000168 ATP-dependent RNA helicase, putative                    117   8e-27
30076.m004617 ATP-dependent RNA helicase, putative                    100   2e-21
29929.m004694 ATP-dependent RNA helicase, putative                     90   2e-18
29900.m001570 ATP-dependent RNA helicase, putative                     73   2e-13
30174.m009095 ATP-dependent RNA helicase, putative                     72   4e-13
29986.m001661 ATP-dependent RNA helicase, putative                     63   2e-10
29838.m001636 ATP-dependent RNA helicase, putative                     60   2e-09

>28644.m000943 ATP-dependent RNA helicase, putative
          Length = 1269

 Score =  252 bits (643), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 129/214 (60%), Positives = 134/214 (62%), Gaps = 2/214 (0%)

Query: 116  KMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEI 175
            KMKVYN RMGMDALQVFPVSR AADQ AGRA RT   TCY LYTESAYLNEM+PSPVPEI
Sbjct: 871  KMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEI 930

Query: 176  QRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWKM 235
            QRTNLGNVV             FDFMDPPPQDNILNSMYQLWVL ALNNVG LTDLGWKM
Sbjct: 931  QRTNLGNVVLLLKSLKIDNLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTDLGWKM 990

Query: 236  VEFHQTLHLLRCCXWESNWDAXMRFXRLXXXXXXXXXXXAPK--IEQRKVMLRGRXXXXX 293
            VEF     L +                +            PK   EQ             
Sbjct: 991  VEFPLDPPLAKMLLMGEELGCLNEVLTIVSMLSVPSVFFRPKDRAEQSDAAREKFFVPES 1050

Query: 294  XXXXXXXVYLQWKEHQYRGDWCNDHFLHIKGLRR 327
                   VYLQWKEHQYRGDWCNDHFLH+KGLR+
Sbjct: 1051 DHLTLLNVYLQWKEHQYRGDWCNDHFLHVKGLRK 1084


>30170.m013734 ATP-dependent RNA helicase, putative
          Length = 1177

 Score =  128 bits (321), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/217 (34%), Positives = 103/217 (47%), Gaps = 2/217 (0%)

Query: 115  CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
             K  VYN + G+D+L + P+S+ +A Q AGRA RT    CY LYTESAY NEM P+ +PE
Sbjct: 819  AKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPE 878

Query: 175  IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWK 234
            IQR NLG                FDFMDPP    ++++M QL+ L AL+  G LT LG K
Sbjct: 879  IQRINLGFTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYSLGALDEEGLLTKLGRK 938

Query: 235  MVEFHQTLHLLRCCXWESNWDAXMRFXRLXXXXXXXXXXXAPKIEQRKV-MLRGRXXXXX 293
            M EF     L +      +         +            P+ +Q +    R +     
Sbjct: 939  MAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPE 998

Query: 294  XX-XXXXXVYLQWKEHQYRGDWCNDHFLHIKGLRRLE 329
                    VY  WK   + G WC ++F+  + LRR +
Sbjct: 999  GDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQ 1035


>27632.m000168 ATP-dependent RNA helicase, putative
          Length = 1031

 Score =  117 bits (293), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 100/216 (46%), Gaps = 2/216 (0%)

Query: 116 KMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEI 175
           K  +YN ++G+D+L V P+S+ +A Q AGRA RT    CY LYTESA+ NEM P+  PEI
Sbjct: 674 KQNLYNPKIGVDSLLVTPISQASAKQRAGRAGRTGPGKCYRLYTESAFRNEMSPATTPEI 733

Query: 176 QRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWKM 235
           QR +L                 FDFMDPP    ++++M QL+ L AL+  G LT  G  M
Sbjct: 734 QRIDLAYPTLTLMAMGIRDLFSFDFMDPPSSQALISAMQQLYGLGALDYEGLLTKTGRLM 793

Query: 236 VEFHQTLHLLRCCXWESNWDAXMRFXRLXXXXXXXXXXXAPKIEQRKVMLRGRXX--XXX 293
            EF     L +      +         +            PK +Q +   R         
Sbjct: 794 AEFPLEPPLSKMLLASIDLGCSDEILTIIAMIQTGNIFYRPKKKQAQADQRRANFLHSEG 853

Query: 294 XXXXXXXVYLQWKEHQYRGDWCNDHFLHIKGLRRLE 329
                  VY  WKE  +   WC+++FL  + L+R +
Sbjct: 854 DHLTLLAVYADWKEKGFSAPWCSENFLQYRSLKRAQ 889


>30076.m004617 ATP-dependent RNA helicase, putative
          Length = 731

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 71/124 (57%)

Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
            K KVYN R+ +++L V P+S+ +A Q +GRA RT    C+ LYTE ++  ++ P   PE
Sbjct: 375 AKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFHQDLQPQTYPE 434

Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWK 234
           I R+NL N V             FDFMDPP  + ++ ++  L  L AL++ G LT LG  
Sbjct: 435 ILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEMLNYLGALDDDGNLTKLGEI 494

Query: 235 MVEF 238
           M EF
Sbjct: 495 MSEF 498


>29929.m004694 ATP-dependent RNA helicase, putative
          Length = 702

 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 97/233 (41%), Gaps = 32/233 (13%)

Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
            K + YN   GM +L V  +S+  A+Q AGRA RT    CY LY    Y ++ +   VPE
Sbjct: 301 VKQRQYNPSTGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSMVYEDDFLDVTVPE 360

Query: 175 IQRTNLGNVV--XXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLG 232
           IQR++L   V               FDF+DPP  +++ +++ QL+++ A++  G +T +G
Sbjct: 361 IQRSSLAGSVLYLKSLDLPDIDILKFDFLDPPSYESLEDALKQLYLIDAIDENGSITSVG 420

Query: 233 WKMVEFHQTLHLLRCCXWESNWDAXMRFXRLXXXXXXXXXXXAPKIEQRKVMLRGRXXXX 292
             M E      L R    E+N +  +                A  +     +L  R    
Sbjct: 421 RTMAELPLEPSLSRTL-MEANENGCL----------SQALTVAAMLSAETTLLPSRSRTT 469

Query: 293 XXX-------------------XXXXXVYLQWKEHQYRGDWCNDHFLHIKGLR 326
                                      ++L W E+ Y  DWC ++ L ++G++
Sbjct: 470 EKKRKHTSFEFDLPDGCGLGDHIQLLQIFLDWDENDYDIDWCKENGLQVRGMK 522


>29900.m001570 ATP-dependent RNA helicase, putative
          Length = 696

 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 1/124 (0%)

Query: 115 CKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPE 174
            K + YN    ++ L V P+S+ +A Q AGRA R     CY LYTE  ++NEM    +PE
Sbjct: 362 SKQRFYNPISDVENLVVAPISKASARQRAGRAGRVRPGKCYRLYTEEYFINEMPTQGIPE 421

Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTD-LGW 233
           +QR+NL + V             FD+   P  + ++ ++  L+ L  L++  +LT  +G+
Sbjct: 422 MQRSNLVSSVIQLKALGIDNILGFDWPASPSPEAMIRALEVLYSLGILDDDAKLTSPVGF 481

Query: 234 KMVE 237
           ++ E
Sbjct: 482 QVAE 485


>30174.m009095 ATP-dependent RNA helicase, putative
          Length = 690

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 114 VCKMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVP 173
           + K + Y+   GM++L V P S+  A Q +GRA R     C+ LY E  +  ++  S  P
Sbjct: 345 LVKARSYDPVKGMESLVVVPTSKAQALQRSGRAGREGPGKCFRLYPEREF-EKLEDSTKP 403

Query: 174 EIQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTD-LG 232
           EI+R NL NV+             FDF++ P +  I+ S+  L++L AL +  +L+D +G
Sbjct: 404 EIKRCNLSNVILQLKALGVDDIIGFDFIEKPSRAAIIKSLEHLFLLGALTDECKLSDPVG 463

Query: 233 WKM 235
            +M
Sbjct: 464 HQM 466


>29986.m001661 ATP-dependent RNA helicase, putative
          Length = 868

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 61/124 (49%), Gaps = 3/124 (2%)

Query: 116 KMKVYNHRMGMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPS-PVPE 174
           K+K YN   GM+  ++  +S+ +A Q AGRA RT    CY LY+ SA  N ++P     E
Sbjct: 311 KVKNYNPSNGMETYEIQWISKASAAQRAGRAGRTGPGHCYRLYS-SAVFNNILPDFSCAE 369

Query: 175 IQRTNLGNVVXXXXXXXXXXXXXFDFMDPPPQDNILNSMYQLWVLSALNNVGRLTDLGWK 234
           I +  L N+V             F F  PP  + +  +   L +L AL+  GRLT LG  
Sbjct: 370 ISKVPLENIV-LILKSMSVKVENFPFPTPPEANALKEAEDCLKILEALDENGRLTALGKA 428

Query: 235 MVEF 238
           M  F
Sbjct: 429 MSYF 432


>29838.m001636 ATP-dependent RNA helicase, putative
          Length = 1588

 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 57/117 (48%), Gaps = 4/117 (3%)

Query: 125 GMDALQVFPVSRTAADQCAGRASRTDLATCYMLYTESAYLNEMVPSPVPEIQRTNLGNVV 184
           GM+ L+V  +S+++A+Q AGRA RT+   CY LY E  Y   M     PEI + +LG  V
Sbjct: 425 GMNVLRVSKISQSSANQRAGRAGRTEPGKCYRLYPEFDY-QSMAFHQEPEICKVHLGIAV 483

Query: 185 XXXXXXXXXXXXXFDFMDPPPQ---DNILNSMYQLWVLSALNNVGRLTDLGWKMVEF 238
                        FDF+D P     D  + ++ QL  ++  N    LT  G  +V+ 
Sbjct: 484 LRILSLGIKNVLEFDFIDAPSAEAVDAAIRNLVQLGAVTCKNGTFELTMDGHYLVKL 540