Jatropha Genome Database

JcCB0213661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0213661.10 + phase: 0 /partial
         (125 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29709.m001232 metal ion binding protein, putative                     135   7e-33

>29709.m001232 metal ion binding protein, putative
          Length = 249

 Score =  135 bits (339), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/127 (55%), Positives = 80/127 (62%), Gaps = 2/127 (1%)

Query: 1   SDLHEWLLKHKGIFNVKTDIKTQNLTVEGTIESDKLLAYIRKKVHRNAXXXXXXXXXXXX 60
           +DL   LLKH+GI++VKT++KTQ L V+G IESDKLLAYIRKKVH+NA            
Sbjct: 123 NDLQNRLLKHEGIYSVKTNMKTQTLLVQGIIESDKLLAYIRKKVHKNAEIITSKPEKMEE 182

Query: 61  XXXXXXXXXXXXXXXXXXX--XXXXIEFKAEKKVEAITKEGNAPYFVHYVYAPQLFSDEN 118
                                    +EFK EKKV A T EGNAPYF+HYVYAPQLFSDEN
Sbjct: 183 KKEVKEAEIKEKQQVEAISINSTKLVEFKTEKKVAAQTTEGNAPYFIHYVYAPQLFSDEN 242

Query: 119 PNACIIM 125
           PNACIIM
Sbjct: 243 PNACIIM 249