Jatropha Genome Database

JcCB0212191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0212191.10 + phase: 0 /partial
         (109 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28629.m000552 conserved hypothetical protein                          149   3e-37

>28629.m000552 conserved hypothetical protein
          Length = 108

 Score =  149 bits (376), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/87 (80%), Positives = 83/87 (95%), Gaps = 1/87 (1%)

Query: 1  MDTSKPAIFVNGGLLPMHLRKRVRTVVQVLGSDRGSVIGKTTDDHQLVVKGT-PPSAALT 59
          MDTSKPAIFVNG LLPMH+RKRVRTV+QV+GSDRG+VIGK++DDHQ+VVKGT PPSA L+
Sbjct: 1  MDTSKPAIFVNGALLPMHVRKRVRTVIQVIGSDRGAVIGKSSDDHQIVVKGTPPPSAPLS 60

Query: 60 NFVEVIGIAESDKSIQAEIWTSFGDTF 86
           FVEVIGIA++DKSIQA+IWT+FGD+F
Sbjct: 61 KFVEVIGIADTDKSIQADIWTNFGDSF 87