Jatropha Genome Database

JcCB0211371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0211371.10 + phase: 0 /partial
         (180 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004622 conserved hypothetical protein                          224   2e-59
29852.m002038 conserved hypothetical protein                          154   3e-38
29333.m001068 conserved hypothetical protein                          146   6e-36

>29848.m004622 conserved hypothetical protein
          Length = 600

 Score =  224 bits (570), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 116/159 (72%), Positives = 133/159 (83%), Gaps = 2/159 (1%)

Query: 1   TAIFNPEKFENLKGAMSFDDIWEDISSITEEYDHKVYIVSWNDHFFVLKADLDAYYIIDS 60
           T IF+PEKFENL+GA SFDDIWE+ISSIT+EYD ++YIVSWNDHFFVLKAD ++YYIIDS
Sbjct: 423 TGIFSPEKFENLQGAKSFDDIWEEISSITKEYDQRIYIVSWNDHFFVLKADANSYYIIDS 482

Query: 61  LGERLFEGCNQAYILKFDESTIMYEKVRKEIDSEEQTAAEKGKDEQDTQEIICKGKECCK 120
           LGERLFEGCNQAYILKFDEST+MY K  KE++SEE+      K+E++++EIICKGKECCK
Sbjct: 483 LGERLFEGCNQAYILKFDESTLMYGKAAKEVNSEEKVEEA--KEEEESEEIICKGKECCK 540

Query: 121 EFIKRFLAAIPXXXXXXXXXXRKVSTFSLLQRLQIDFHY 159
           EFIKRFLAAI             VSTFSLLQRLQIDFHY
Sbjct: 541 EFIKRFLAAILIRELEEQDKKGSVSTFSLLQRLQIDFHY 579


>29852.m002038 conserved hypothetical protein
          Length = 733

 Score =  154 bits (388), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/190 (45%), Positives = 112/190 (58%), Gaps = 33/190 (17%)

Query: 2   AIFNPEKFEN-----LKGAMSFDDIWEDIS----SITEEYDHKVYIVSWNDHFFVLKADL 52
             F+PE  E      L+GAMSFD IWE+IS    +     D  +YIVSWNDHFFVLK + 
Sbjct: 523 GFFHPEGLEGGDFDFLQGAMSFDSIWEEISHNGSNCPANRDPMIYIVSWNDHFFVLKVEQ 582

Query: 53  DAYYIIDSLGERLFEGCNQAYILKFDESTIM---------------YEKVRKEIDSEEQT 97
           DAYYIID+LGERL+EGCNQAYILKF++ T +                +KV+     E+ +
Sbjct: 583 DAYYIIDTLGERLYEGCNQAYILKFNKDTTIQRLPIETKESDNKLESDKVQPGNSKEKNS 642

Query: 98  AA--------EKGKDEQDTQEIICKGKECCKEFIKRFLAAIPXXXXXXXXXXRKVSTFSL 149
           A         E GK + + +EI+CKGKE CKE+IKRFLAAIP            +++  +
Sbjct: 643 AKKILQSSPNEAGKSQME-EEIVCKGKESCKEYIKRFLAAIPIRELQADIKKGLMASTPI 701

Query: 150 LQRLQIDFHY 159
             RLQI+FHY
Sbjct: 702 HHRLQIEFHY 711


>29333.m001068 conserved hypothetical protein
          Length = 773

 Score =  146 bits (368), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 111/188 (59%), Gaps = 36/188 (19%)

Query: 8   KFENLKGAMSFDDIWEDISSITEEY----DHKVYIVSWNDHFFVLKADLDAYYIIDSLGE 63
           +F+ L GAMSFD+IW++IS I  E     + ++YIVSWNDHFF+LK + +AYYIID+LGE
Sbjct: 554 RFDFLHGAMSFDNIWDEISGIGSERPSNEEPQIYIVSWNDHFFILKVESEAYYIIDTLGE 613

Query: 64  RLFEGCNQAYILKFDESTIM------------------------YEKVRKEIDSEEQTA- 98
           RL+EGCNQAYILKFD +TI+                         E  + E++ +E+ + 
Sbjct: 614 RLYEGCNQAYILKFDSNTIIRKLPNVARLSDEKTTNDQQIVAVAVEPKKLEVNLKEEASV 673

Query: 99  -------AEKGKDEQDTQEIICKGKECCKEFIKRFLAAIPXXXXXXXXXXRKVSTFSLLQ 151
                   E+    +D  E +C+GK+ CKE+IK FLAAIP            +++  L Q
Sbjct: 674 SGPAVIKPEEPMKGEDEGEEVCRGKDSCKEYIKSFLAAIPIRELQADIKKGLMASTPLHQ 733

Query: 152 RLQIDFHY 159
           RLQI+FHY
Sbjct: 734 RLQIEFHY 741