Jatropha Genome Database

JcCB0209291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0209291.10 + phase: 0 /partial
         (166 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001708 conserved hypothetical protein                          264   1e-71

>29680.m001708 conserved hypothetical protein
          Length = 393

 Score =  264 bits (675), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 138/172 (80%), Positives = 147/172 (85%), Gaps = 6/172 (3%)

Query: 1   MLFQVGGQGTRPTFFEMAAAQQLPASLRAALTYSIGVLALRRPLLHKVLDYEDEFFALLM 60
           MLFQVGGQGTRPTFFEMAAAQQLP SLRAALTYSIGVLALRRPLLHKVLDYEDEFFAL M
Sbjct: 1   MLFQVGGQGTRPTFFEMAAAQQLPTSLRAALTYSIGVLALRRPLLHKVLDYEDEFFALFM 60

Query: 61  LVLETHSLRITDASFSESLYGLRRRAVKIKAKN----LSSGEAIELSGLQKHQRVLSVAF 116
           LVLETHSLR TDASFSESLYGLRRR VKI+ K     L+ G+ IELSGLQK QR+LSVAF
Sbjct: 61  LVLETHSLRTTDASFSESLYGLRRRGVKIQVKKKDARLNLGDGIELSGLQKRQRILSVAF 120

Query: 117 LVVLPYFKSKLHSIYNKERDARLQSSLWGD-DAIFENFDS-HRGEDPLVSRG 166
           LVVLPYFKSKL+S+YNKER+ARLQ+SLWGD    FE  D   R +  LVSRG
Sbjct: 121 LVVLPYFKSKLYSLYNKEREARLQASLWGDGGGPFEGTDYFDRDDGSLVSRG 172