Jatropha Genome Database

JcCB0207431.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0207431.30 - phase: 1 /pseudo/partial
         (102 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008887 nucleotide binding protein, putative                     73   3e-14

>30174.m008887 nucleotide binding protein, putative
          Length = 438

 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 38/42 (90%)

Query: 60  GEITWMAWAPKAIPTGNGQGLVLATASVDKKVKLWAAPSLHS 101
           G+ITW+AWAPK IP G+GQ +VLATASVDKKVKLWAAPS+ S
Sbjct: 396 GQITWIAWAPKTIPNGDGQAMVLATASVDKKVKLWAAPSVDS 437