Jatropha Genome Database

JcCB0207251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0207251.10 + phase: 0 /pseudo/partial
         (292 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014233 Structural maintenance of chromosome, putative          348   1e-96

>30147.m014233 Structural maintenance of chromosome, putative
          Length = 1176

 Score =  348 bits (894), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 176/208 (84%), Positives = 187/208 (89%)

Query: 85   KERASLESQLGSLRMQINHLNLEVEEQKSKVASVRNTHDEAHSELELIRLKMKECDSQIN 144
            KE+ASLESQLGSLR QINHLNLEVEEQK+KVASVRN H++A S+L+LI  KMKECDSQI+
Sbjct: 829  KEQASLESQLGSLRTQINHLNLEVEEQKAKVASVRNNHEQAQSDLKLISQKMKECDSQIS 888

Query: 145  SFLKEQQKLQQKVSETKLERKKLENEVKRMEMQQKDCSTKVDKLIEKHAWIASEKQLFGR 204
            S LKEQQKLQQKVSETKL+RKKLENEVKRME++QKDCS KVDKLIEKHAWIASEKQLFGR
Sbjct: 889  SILKEQQKLQQKVSETKLDRKKLENEVKRMELEQKDCSMKVDKLIEKHAWIASEKQLFGR 948

Query: 205  SGTDYDFMSRDPKKAREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIEN 264
            SGTDYDFMSRDP KAREEL+KLQ EQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIEN
Sbjct: 949  SGTDYDFMSRDPFKAREELDKLQTEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIEN 1008

Query: 265  DKSKIKKVIXXXXXXXXXXXXVTWVKVN 292
            DKSKIKKVI            VTWVKVN
Sbjct: 1009 DKSKIKKVIEELDEKKKETLKVTWVKVN 1036