Jatropha Genome Database

JcCB0206951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0206951.10 - phase: 0 
         (212 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005306 pre-mRNA cleavage factor im, 25kD subunit, putative     367   e-102
30147.m013755 pre-mRNA cleavage factor im, 25kD subunit, putative     235   1e-62

>29912.m005306 pre-mRNA cleavage factor im, 25kD subunit, putative
          Length = 214

 Score =  367 bits (941), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/214 (82%), Positives = 194/214 (90%), Gaps = 2/214 (0%)

Query: 1   MGDQMVL--DNGHEGSRDQGSVLDIYPLSSYYFGAKDPLSFKNETLADRVQRMKSNYLAH 58
           MGD  V+  +N HE SRDQG VLDIYPLS YYFG+KDPL F++ETL DRVQRMKSNYLAH
Sbjct: 1   MGDHEVVVNNNHHEASRDQGFVLDIYPLSRYYFGSKDPLPFRDETLVDRVQRMKSNYLAH 60

Query: 59  GLRTYVEAVILVELFKHPHLLLLQIRNSIFRLPGGRLRPGESDIDGLKRKLSRKLSGNED 118
           GLRT VEAVILVELFKHPHLLLLQI+NSIF+LPGGR+RPGESDI GLKRKLSRKLS N+D
Sbjct: 61  GLRTCVEAVILVELFKHPHLLLLQIKNSIFKLPGGRIRPGESDIGGLKRKLSRKLSNNQD 120

Query: 119 ETDWEVDECLGMWWKPDFETLPYPYMPPNVKTPKECTKLFLVRLPMSRKFIVPKNLKLLA 178
           +TDWEV ECLGMWW+PDFETL YPY+PPN+KTPKECTKLFLVRLP S KFIVPKNLKLLA
Sbjct: 121 QTDWEVGECLGMWWRPDFETLLYPYLPPNLKTPKECTKLFLVRLPTSCKFIVPKNLKLLA 180

Query: 179 IPLCQIHENHKTYGSIISGIPQLLSKFSFNIINS 212
           +PL QIH+NHKTYG IISG+PQLLSK+SF IINS
Sbjct: 181 VPLSQIHDNHKTYGGIISGVPQLLSKYSFRIINS 214


>30147.m013755 pre-mRNA cleavage factor im, 25kD subunit, putative
          Length = 200

 Score =  235 bits (599), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 108/197 (54%), Positives = 147/197 (74%), Gaps = 2/197 (1%)

Query: 18  GSVLDIYPLSSYYFGAKDPLSFKNETLADRVQRMKSNYLAHGLRTYVEAVILVELFKHPH 77
            SV++ YPLSSY FG K+P   K+ ++ADR+ RMK NY+  G+RT VEA++LV+   HPH
Sbjct: 4   SSVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPH 63

Query: 78  LLLLQIRNSIFRLPGGRLRPGESDIDGLKRKLSRKLSGNEDET--DWEVDECLGMWWKPD 135
           +LLLQI N+  +LPGGRL+PGE++I+GLKRKL+ KL  N      DW++ EC+ +WW+P+
Sbjct: 64  ILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPN 123

Query: 136 FETLPYPYMPPNVKTPKECTKLFLVRLPMSRKFIVPKNLKLLAIPLCQIHENHKTYGSII 195
           FET+ YPY PP++  PKEC KLFLV L     F VPKNLKLLA+PL ++++N + YG +I
Sbjct: 124 FETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYGPVI 183

Query: 196 SGIPQLLSKFSFNIINS 212
           S IPQ LS+F FN+I +
Sbjct: 184 STIPQQLSRFQFNMITT 200