Jatropha Genome Database

JcCB0206681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0206681.10 + phase: 0 /partial
         (93 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014133 mads box protein, putative                              113   2e-26
30174.m008934 mads box protein, putative                               91   1e-19
29908.m005982 mads box protein, putative                               87   1e-18
29907.m000663 mads box protein, putative                               86   3e-18
30170.m013776 mads box protein, putative                               86   4e-18
29596.m000699 mads box protein, putative                               86   5e-18
30138.m003939 mads box protein, putative                               86   5e-18
29838.m001690 mads box protein, putative                               85   6e-18
29804.m001536 mads box protein, putative                               85   9e-18
29648.m001978 mads box protein, putative                               82   5e-17
30221.m002218 mads box protein, putative                               81   1e-16
29782.m000119 Floral homeotic protein DEFICIENS, putative              77   2e-15
30138.m004061 mads box protein, putative                               68   7e-13
28348.m000077 mads box protein, putative                               68   9e-13
29693.m002042 mads box protein, putative                               66   4e-12
29693.m002039 mads box protein, putative                               65   1e-11
30099.m001672 mads box protein, putative                               61   9e-11
27866.m000233 mads box protein, putative                               60   1e-10
29813.m001508 mads box protein, putative                               60   2e-10
29693.m002041 mads box protein, putative                               60   2e-10
29739.m003627 mads box protein, putative                               58   1e-09
28830.m000229 mads box protein, putative                               58   1e-09
29613.m000367 mads box protein, putative                               57   2e-09
29838.m001672 mads box protein, putative                               56   3e-09
27893.m000228 mads box protein, putative                               56   3e-09
30099.m001671 mads box protein, putative                               55   7e-09
28180.m000391 mads box protein, putative                               54   1e-08
29912.m005524 mads box protein, putative                               54   1e-08

>30147.m014133 mads box protein, putative
          Length = 213

 Score =  113 bits (282), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/64 (85%), Positives = 58/64 (90%)

Query: 27 VRGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFASKE 86
          VRGKIQM+RIEN  SRQVTFSKRRNGLLKKAYELSVLCDAEVAV+IFSQ+GRLSEFAS E
Sbjct: 2  VRGKIQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLSEFASNE 61

Query: 87 YVST 90
             T
Sbjct: 62 MQKT 65


>30174.m008934 mads box protein, putative
          Length = 244

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/63 (68%), Positives = 52/63 (82%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFASKEY 87
          RG++++KRIEN  +RQVTFSKRRNGLLKKAYELSVLCDAEVA++IFS  G+L EF +   
Sbjct: 3  RGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGNAGT 62

Query: 88 VST 90
            T
Sbjct: 63 TKT 65


>29908.m005982 mads box protein, putative
          Length = 347

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/61 (60%), Positives = 52/61 (85%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFASKEY 87
          R K+++KRIEN  +RQVTFSKRRNGL+KKAYELS+LCD ++A+++FS  GRLS F+ ++ 
Sbjct: 3  RVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGRKR 62

Query: 88 V 88
          +
Sbjct: 63 I 63


>29907.m000663 mads box protein, putative
          Length = 205

 Score = 86.3 bits (212), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 49/63 (77%)

Query: 27 VRGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFASKE 86
           RGK+QMKRIEN   RQVTF KRR+GLLKKA ELSVLCDAE+ + IFS  G+L + A+K 
Sbjct: 2  ARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDLATKG 61

Query: 87 YVS 89
           +S
Sbjct: 62 TMS 64


>30170.m013776 mads box protein, putative
          Length = 230

 Score = 85.5 bits (210), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFAS 84
          R K+Q+KRIEN  +RQVTFSKRRNGL+KKAYELSVLCD +VA+++FS  GRLS F+ 
Sbjct: 3  RVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFSG 59


>29596.m000699 mads box protein, putative
          Length = 262

 Score = 85.5 bits (210), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 49/57 (85%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFAS 84
          RGKI ++RI+N  SRQVTFSKRRNGLLKKA EL++LCDAEV V+IFS  G+L +F+S
Sbjct: 3  RGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSS 59


>30138.m003939 mads box protein, putative
          Length = 244

 Score = 85.5 bits (210), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 52/57 (91%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFAS 84
          RG++Q+KRIEN  +RQVTFSKRR GLLKKA+E+SVLCDAEVA+++FS +G+L E+++
Sbjct: 3  RGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59


>29838.m001690 mads box protein, putative
          Length = 61

 Score = 85.1 bits (209), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 49/58 (84%)

Query: 27 VRGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFAS 84
           R KIQ+K+I+N+ +RQVTFSKRR GL KKAYELS LCDAE+A+++FS  G+L E+AS
Sbjct: 2  TRQKIQIKKIDNITARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSATGKLFEYAS 59


>29804.m001536 mads box protein, putative
          Length = 266

 Score = 84.7 bits (208), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 48/57 (84%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFAS 84
          RGKI ++RI+N  SRQVTFSKRRNGLLKKA ELS+LCDAEV V+IFS   +L ++AS
Sbjct: 30 RGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIIFSSTSKLYDYAS 86


>29648.m001978 mads box protein, putative
          Length = 234

 Score = 82.4 bits (202), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 50/57 (87%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFAS 84
          RG+I++KRIEN  +RQVT+SKRRNG++KKA E++VLCDAEV+++IF+  G++ E+ S
Sbjct: 3  RGRIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAEVSLIIFASSGKMHEYCS 59


>30221.m002218 mads box protein, putative
          Length = 233

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 48/58 (82%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFASK 85
          RGKI +KRIEN  +RQVTFSKRR GLLKK +ELSVLCDA++ ++IFS  G++ ++ ++
Sbjct: 3  RGKIPIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCTE 60


>29782.m000119 Floral homeotic protein DEFICIENS, putative
          Length = 235

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 48/58 (82%), Gaps = 1/58 (1%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGR-LSEFAS 84
          RGKI++K+IEN  +RQVT+SKRRNG+ KKA EL+VLCDA+V++++FS  GR   EF S
Sbjct: 3  RGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGRKFHEFIS 60


>30138.m004061 mads box protein, putative
          Length = 363

 Score = 68.2 bits (165), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 44/55 (80%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEF 82
          R K+++KR+E+  +RQVT+SKRRNG+LKKA ELS+LCD  + +++FS  G+ + F
Sbjct: 3  RVKLKIKRLESTSNRQVTYSKRRNGILKKAKELSILCDIHIVLLMFSPTGKPTLF 57


>28348.m000077 mads box protein, putative
          Length = 215

 Score = 68.2 bits (165), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/64 (51%), Positives = 48/64 (75%)

Query: 16 ITDFFLQDMAKVRGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQ 75
          IT+   +  +K R KI++K++ENV  R VTFSKR++G+ KKA ELS LC AE+AV++FS 
Sbjct: 6  ITNQRQRKTSKGRQKIEIKKLENVNRRYVTFSKRKHGIFKKATELSTLCGAEIAVVLFSG 65

Query: 76 EGRL 79
           G++
Sbjct: 66 HGKV 69


>29693.m002042 mads box protein, putative
          Length = 220

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 40/59 (67%)

Query: 25 AKVRGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFA 83
           K R KI MKRIEN + R +TFSKRR+G+ KKA EL  LC AEV +++FS  G+   F 
Sbjct: 7  TKGRQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSFG 65


>29693.m002039 mads box protein, putative
          Length = 172

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFA 83
          R KI+MK +++  SRQVTFSKRR GL KKA EL+ LC A++A+++FS  G+   F 
Sbjct: 3  RRKIEMKMVKDTSSRQVTFSKRRTGLFKKANELATLCAAQIAIVVFSPGGKPFSFG 58


>30099.m001672 mads box protein, putative
          Length = 217

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 41/59 (69%)

Query: 25 AKVRGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFA 83
          +K R KI M ++ N  + QVTFSKRR+GL KKA ELS LC AE+A+++FS   ++  F 
Sbjct: 5  SKGRQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSFG 63


>27866.m000233 mads box protein, putative
          Length = 217

 Score = 60.5 bits (145), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/53 (60%), Positives = 38/53 (71%)

Query: 22 QDMAKVRGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFS 74
          Q   K R KI++K IE   + QVTFSKRR GL KKA ELS+LC A+VAV+ FS
Sbjct: 8  QKRTKGRQKIEIKPIEGKSNLQVTFSKRRAGLFKKASELSLLCGAQVAVLAFS 60


>29813.m001508 mads box protein, putative
          Length = 360

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 41/53 (77%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLS 80
          R K+++K++EN   RQ T+ KR++G++KKA ELS+LCD ++ +++FS  G+ S
Sbjct: 3  RVKLKIKKLENTNGRQATYGKRKHGIIKKAKELSILCDIDIILLMFSPTGKPS 55


>29693.m002041 mads box protein, putative
          Length = 239

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/58 (51%), Positives = 40/58 (68%)

Query: 26 KVRGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFA 83
          K R KI+MK+IEN   R +TFSKRR+G+ KKA EL  L  AE+A +++S  G+   FA
Sbjct: 11 KGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSFA 68


>29739.m003627 mads box protein, putative
          Length = 62

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 43/59 (72%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFASKE 86
          R K+++ R+E+VK+RQV +SKR+ G+LKK  EL+ LCD ++ +++FS  G+ S +   +
Sbjct: 3  RRKLKILRLESVKARQVKYSKRKLGVLKKGKELATLCDVDLGLIMFSPSGKPSLYVGHD 61


>28830.m000229 mads box protein, putative
          Length = 197

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 34/51 (66%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGR 78
          R K QM  I+   +RQV+FSKRR G+ KKA EL  LC  E AV+IFS  G+
Sbjct: 3  RKKTQMSLIQGESARQVSFSKRRTGIFKKASELCTLCAVEAAVVIFSPGGK 53


>29613.m000367 mads box protein, putative
          Length = 183

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 37/62 (59%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFASKEY 87
          R KI +++I      QVTFSKRR GL KKA EL  LC  E+A+++FS  G+   F   E 
Sbjct: 8  RQKIAIEKISKKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGKAFSFGHPEV 67

Query: 88 VS 89
           S
Sbjct: 68 GS 69


>29838.m001672 mads box protein, putative
          Length = 207

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%)

Query: 25 AKVRGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFAS 84
           K R +I+M +I    +R VTFSKRR G+ KKA ELS LC AE+++++FS   R   F +
Sbjct: 6  GKGRQRIEMVKISKESNRLVTFSKRRYGVFKKASELSTLCGAEISIIVFSPGKRAFSFGN 65

Query: 85 K 85
           
Sbjct: 66 P 66


>27893.m000228 mads box protein, putative
          Length = 349

 Score = 56.2 bits (134), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/45 (55%), Positives = 35/45 (77%)

Query: 30 KIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFS 74
          K  MK++E+ K R V+F+KRRNGL  KA EL +LCDA++AV++ S
Sbjct: 6  KRPMKKLESQKQRSVSFTKRRNGLFNKAAELFMLCDAQLAVLVAS 50


>30099.m001671 mads box protein, putative
          Length = 226

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 36/62 (58%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFASKEY 87
          R KI +++I      QVTFSKRR GL KKA EL  LC  E+A+++FS   +   F   E 
Sbjct: 28 RQKIAIEKISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSFGHPEV 87

Query: 88 VS 89
           S
Sbjct: 88 ES 89


>28180.m000391 mads box protein, putative
          Length = 328

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 38/55 (69%), Gaps = 1/55 (1%)

Query: 24 MAKVRGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGR 78
          MAK R K+ MK+ E  K R V+F+KRR GL  KA EL +LCDA++A+++ S   R
Sbjct: 1  MAKTR-KLPMKKRETKKQRSVSFTKRRYGLFNKAAELFMLCDAQLALLVSSPCSR 54


>29912.m005524 mads box protein, putative
          Length = 338

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query: 28 RGKIQMKRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFS 74
          RGK+ M+ I N KSR +T+ KR+ GL KK  E  +LCD +  ++IFS
Sbjct: 3  RGKLNMELISNEKSRMITYHKRKKGLTKKVQEFHILCDVDACIIIFS 49