Jatropha Genome Database

JcCB0205061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0205061.10 + phase: 0 
         (95 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008781 lipoxygenase, putative                                  127   9e-31
29726.m003891 lipoxygenase, putative                                   70   2e-13
29680.m001710 lipoxygenase, putative                                   54   1e-08

>30128.m008781 lipoxygenase, putative
          Length = 871

 Score =  127 bits (320), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 60/73 (82%), Positives = 66/73 (90%)

Query: 1  MLQNIVGAITGDSNGSKKIKCVSGECKKITGSVVLMKKNVLDFNDFHASLLDRVHELFGH 60
          M QNIV AITGDSNG+KK+KCVSG+CKKI G+VVLMKKNVLDFNDF+AS LD +HEL GH
Sbjct: 1  MFQNIVDAITGDSNGNKKMKCVSGDCKKIKGTVVLMKKNVLDFNDFNASFLDGIHELAGH 60

Query: 61 GVSLQLISSVTSE 73
          GVSLQLISSV SE
Sbjct: 61 GVSLQLISSVNSE 73


>29726.m003891 lipoxygenase, putative
          Length = 868

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/43 (76%), Positives = 37/43 (86%)

Query: 28 KITGSVVLMKKNVLDFNDFHASLLDRVHELFGHGVSLQLISSV 70
          KI G+VVLMKKNVLDF+D  AS LDRVHEL G GVS+QLIS+V
Sbjct: 22 KIKGTVVLMKKNVLDFSDIKASFLDRVHELLGKGVSMQLISAV 64


>29680.m001710 lipoxygenase, putative
          Length = 865

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 47/70 (67%), Gaps = 2/70 (2%)

Query: 1  MLQNIVGAITGDSNGSKKIKCVSGECKKITGSVVLM-KKNVLDFNDFHASLLDRVHELFG 59
          M  NI+  +TG+ N SKK+KC   + KKI G+V+LM KKN+L  +D  A + D + EL G
Sbjct: 1  MSNNIIQVVTGE-NRSKKMKCEISDSKKIKGTVLLMKKKNLLGHSDPEAFVHDFIDELKG 59

Query: 60 HGVSLQLISS 69
          + V L+LIS+
Sbjct: 60 NKVVLRLISA 69