Jatropha Genome Database

JcCB0204821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0204821.10 - phase: 2 /pseudo/partial
         (244 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29640.m000405 EH-domain-containing protein, putative                  372   e-103
29842.m003519 EH-domain-containing protein, putative                  347   3e-96

>29640.m000405 EH-domain-containing protein, putative
          Length = 550

 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 178/191 (93%), Positives = 185/191 (96%), Gaps = 1/191 (0%)

Query: 51  TSSDFDAKPMVMLLGQYSTGKTTFIKHLLKTSYPGAHIGPEPTTDRFVVVMSGTDERSIP 110
           T+SDFDAKPMVMLLGQYSTGKTTFIKHLLK+SYPGAHIGPEPTTDRFVVVMSGTDERSIP
Sbjct: 195 TNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGTDERSIP 254

Query: 111 GNTVAVQADMPFNGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYD 170
           GNTVAVQADMPFNGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEKQRTQR+YD
Sbjct: 255 GNTVAVQADMPFNGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEKQRTQRSYD 314

Query: 171 FTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADQVDTQQVR 230
           FTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADQVDTQQ+ 
Sbjct: 315 FTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADQVDTQQLM 374

Query: 231 ILFNNVLFWTL 241
            ++   L W+L
Sbjct: 375 RVY-GALMWSL 384


>29842.m003519 EH-domain-containing protein, putative
          Length = 545

 Score =  347 bits (890), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 163/191 (85%), Positives = 180/191 (94%), Gaps = 1/191 (0%)

Query: 51  TSSDFDAKPMVMLLGQYSTGKTTFIKHLLKTSYPGAHIGPEPTTDRFVVVMSGTDERSIP 110
           T+S+FDAKPMVMLLGQYSTGKTTFIKH+L+ +YPGAHIGPEPTTDRFVVVMSG+DERSIP
Sbjct: 190 TNSEFDAKPMVMLLGQYSTGKTTFIKHILRCNYPGAHIGPEPTTDRFVVVMSGSDERSIP 249

Query: 111 GNTVAVQADMPFNGLTTFGTAFLSKFECSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYD 170
           GNTVAVQADMPF+GLTTFG AFLSKFEC+QMPHPLL+ IT VDTPGVLSGEKQRTQR+YD
Sbjct: 250 GNTVAVQADMPFSGLTTFGGAFLSKFECAQMPHPLLDEITIVDTPGVLSGEKQRTQRSYD 309

Query: 171 FTGVTSWFAAKCDLILLLFDPHKLDVSDEFKRVISSLRGHDDKIRVVLNKADQVDTQQVR 230
           FTGV SWFAAKCDLILLLFDPHKLD+SDEFKRVI+SLRG+DDKIRVVLNKADQVDTQQ+ 
Sbjct: 310 FTGVISWFAAKCDLILLLFDPHKLDISDEFKRVIASLRGNDDKIRVVLNKADQVDTQQLM 369

Query: 231 ILFNNVLFWTL 241
            ++   L W+L
Sbjct: 370 RVY-GALMWSL 379