Jatropha Genome Database

JcCB0203531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0203531.10 + phase: 0 /partial
         (148 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004627 conserved hypothetical protein                          148   1e-36

>29848.m004627 conserved hypothetical protein
          Length = 426

 Score =  148 bits (373), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 108/141 (76%), Gaps = 4/141 (2%)

Query: 1   IPPTRPKSPKLGRRKSSSPVDSEGNNGENSRPGRLSLDEKVSTNRSAKGPSPIHSKKPQR 60
           IP TRPKSPKLGR+KSSSPVDSE N+ ++ R  RLSLD+KVS N +AKGPSPI SKKPQR
Sbjct: 289 IPTTRPKSPKLGRKKSSSPVDSEENDDQSRRLARLSLDQKVSHNNAAKGPSPIRSKKPQR 348

Query: 61  KSLPKLPSEKTSLSNATNDEKTPLSKALIKENPPTSNQMTEDAS-AQKQEAIIPRALASE 119
           KSLPKLPS+KTSLS+A NDEK   S+A  +EN  TSNQ  E +S A++Q AI+  A+A  
Sbjct: 349 KSLPKLPSQKTSLSSAVNDEKVISSEATNEEN-VTSNQTNEGSSPAEEQNAILT-AVAG- 405

Query: 120 EIEAQIDEVVVVREQAEPTLL 140
           E+  Q D   VV EQA+PT++
Sbjct: 406 EVHFQTDGEFVVGEQAQPTVV 426