Jatropha Genome Database

JcCB0202011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0202011.10 + phase: 0 /partial
         (212 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30078.m002241 conserved hypothetical protein                          327   3e-90

>30078.m002241 conserved hypothetical protein
          Length = 1722

 Score =  327 bits (837), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 159/212 (75%), Positives = 178/212 (83%), Gaps = 2/212 (0%)

Query: 1    ICMNTKIRATAFAAFGALSSYGVGAQREIFLEQIHAATPRLVLHLHDDDISVRHACRNTL 60
            ICMNTKIRATAFAAFGALSSYG G Q EIFLEQIHAA PRLVLHLHDDDISVR ACRNTL
Sbjct: 1512 ICMNTKIRATAFAAFGALSSYGAGTQHEIFLEQIHAAIPRLVLHLHDDDISVRQACRNTL 1571

Query: 61   KHIAPLMKIEGLASLSNSHCCNSDHRSDYEGFLRDFTRLLTQYLPSRVDSYMASTIQAID 120
            K IAPL+++EGLA+L NSHC  S++RSDYE FLRDFT+  +Q+LPSRVD+YMAS IQA++
Sbjct: 1572 KRIAPLVEMEGLAALFNSHCFTSENRSDYEDFLRDFTKQFSQHLPSRVDTYMASAIQALE 1631

Query: 121  APWPIIQANXXXXXXXXXXXXDDPRILALYYAQVFGMLVGKMNQSADAVVRATCSSALGL 180
            APWP+IQAN            DD  ILALYYAQVFG+LVGKM++SADAV+RATCSSALGL
Sbjct: 1632 APWPVIQANAIYLASSLLSLSDDQHILALYYAQVFGLLVGKMSRSADAVIRATCSSALGL 1691

Query: 181  LLRSTNSLSWRTARLDRDRVESSRRTHDSDKK 212
            LL+STN LSWR ARL  DRVES RR HDS+ K
Sbjct: 1692 LLKSTNFLSWRAARL--DRVESFRRGHDSESK 1721