Jatropha Genome Database

JcCB0200811.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0200811.20 - phase: 0 /pseudo/partial
         (216 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014071 ornithine carbamoyltransferase, putative                396   e-111
41640.m000023 ornithine carbamoyltransferase, putative                110   7e-25
29762.m000495 Aspartate carbamoyltransferase 2, chloroplast prec...    56   1e-08

>30170.m014071 ornithine carbamoyltransferase, putative
          Length = 378

 Score =  396 bits (1018), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/201 (92%), Positives = 194/201 (96%)

Query: 16  LFLLQDILDLAKYASVPVINGLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGDGNNIV 75
           +F  QDILDLAKYA+VPV+NGLTDYNHPCQIMADALT+IEHIGQLEGTKVVYVGDGNNIV
Sbjct: 178 VFSHQDILDLAKYATVPVVNGLTDYNHPCQIMADALTIIEHIGQLEGTKVVYVGDGNNIV 237

Query: 76  HSWLLLASVIPFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYSDV 135
           HSWLLLASVIPFHF+C CPKGFEPDA+TV+KAQ AGISKIEITNDPKEAV GADVVYSDV
Sbjct: 238 HSWLLLASVIPFHFICVCPKGFEPDAETVKKAQEAGISKIEITNDPKEAVRGADVVYSDV 297

Query: 136 WASMGQKEEAAHRRKVFQGFQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNSIV 195
           WASMGQKEEAAHRRK FQGFQVDEDLMK+AGPKAYFMHCLPAERGVEVTDGVIEAPNSIV
Sbjct: 298 WASMGQKEEAAHRRKAFQGFQVDEDLMKLAGPKAYFMHCLPAERGVEVTDGVIEAPNSIV 357

Query: 196 FPQAENRMHAQNAIMLHALGL 216
           FPQAENRMHAQNAIMLH LGL
Sbjct: 358 FPQAENRMHAQNAIMLHVLGL 378


>41640.m000023 ornithine carbamoyltransferase, putative
          Length = 141

 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 85/137 (62%), Gaps = 4/137 (2%)

Query: 74  IVHSWLLLASVIPFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYS 133
           +  +++  A    F    ACP+GFEP     E    A   ++ +  DPKEA  GA ++ +
Sbjct: 1   MCQTYIQAARQFDFELRIACPQGFEPR----EDLLAANKDRVVVVRDPKEAARGAHLLAT 56

Query: 134 DVWASMGQKEEAAHRRKVFQGFQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNS 193
           DVWASMG + E   RR+ F G+Q++ +L+ +A   A +MHCLPA R  E++  ++E P+S
Sbjct: 57  DVWASMGHEHEINERRRAFAGYQLNRELLAVAAADALYMHCLPAHREEEISADLMEDPHS 116

Query: 194 IVFPQAENRMHAQNAIM 210
           +++ +AENR+H+Q A+M
Sbjct: 117 VIWDEAENRLHSQKALM 133


>29762.m000495 Aspartate carbamoyltransferase 2, chloroplast
           precursor, putative
          Length = 360

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 87/190 (45%), Gaps = 19/190 (10%)

Query: 31  VPVIN-GLTDYNHPCQIMADALTMIEHIGQLEGTKVVYVGD---GNNIVHSWLLLASV-- 84
           +PVIN G     HP Q + D  T+   IG+L+G KV  VGD   G  +     LLA    
Sbjct: 173 IPVINAGDGPGQHPTQALLDVYTIDREIGKLDGIKVALVGDLANGRTVRSLAYLLAKYQD 232

Query: 85  IPFHFVCACPKGFEPDAKTVEKAQLAGISKIEITNDPKEAVVGADVVYSDVWASMGQKEE 144
           +  +FV       + D K    ++  G+ + E + D  E     DVVY     +  Q+E 
Sbjct: 233 VKIYFVSPDVVKMKDDIKDYLASR--GV-EWEESADLMEVASKCDVVYQ----TRIQRER 285

Query: 145 AAHRRKVFQ----GFQVDEDLMKIAGPKAYFMHCLPAERGVEVTDGVIEAPNSIVFPQAE 200
              R  +++     + VD D++ +    A  MH LP  R  E+T  V   P +  F QA+
Sbjct: 286 FGERIDLYEEARGKYIVDSDVLNVMQKHAVVMHPLP--RLDEITVDVDVDPRAAYFRQAK 343

Query: 201 NRMHAQNAIM 210
           N ++ + A++
Sbjct: 344 NGLYIRMALL 353