Jatropha Genome Database

JcCB0198891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0198891.10 + phase: 0 
         (232 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29633.m000905 succinate dehydrogenase, putative                       409   e-115
28745.m000035 succinate dehydrogenase, putative                       263   4e-71

>29633.m000905 succinate dehydrogenase, putative
          Length = 284

 Score =  409 bits (1050), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/229 (86%), Positives = 212/229 (92%), Gaps = 1/229 (0%)

Query: 1   MATGLIRRGVSIARVSSSAPFTARFVPARFHASEAEAQKVEPKATSSTNLKTFQIYRWNP 60
           MATGL+R+G+SIARVS +APFT+R +P RFHASEAEAQKVEPKA+S+ +LKTFQIYRWNP
Sbjct: 1   MATGLLRKGLSIARVSKTAPFTSRLIPTRFHASEAEAQKVEPKASSTASLKTFQIYRWNP 60

Query: 61  DNPAKPQLQDYQIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNG 120
           DNP+KP LQDY+IDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNG
Sbjct: 61  DNPSKPTLQDYKIDLKECGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNG 120

Query: 121 LACL-TKIPSGNSSTITPLPHMYVIKDLVVDMTNFYNQYKSIEPWLKRKNPPQVPGKEIL 179
           LACL        SSTITPLPHM+VIKDLVVDMTNFYNQYKSIEPWLKRKNPP V GKEI 
Sbjct: 121 LACLTKISSGSTSSTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPVDGKEIP 180

Query: 180 QSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRYFS 228
           QSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANR+ S
Sbjct: 181 QSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWIS 229


>28745.m000035 succinate dehydrogenase, putative
          Length = 313

 Score =  263 bits (673), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 132/205 (64%), Positives = 153/205 (74%), Gaps = 12/205 (5%)

Query: 31  HASEAEAQKVEPKATSSTNLK----TFQIYRWNPDNPA-KPQLQDYQIDLKECGPMVLDA 85
           HA E+    VE   T   N+K     F++YRW+PDNP  KP LQ Y IDL  CGPMVLDA
Sbjct: 45  HAQES----VETYGTVQDNIKKLIKEFRVYRWSPDNPNNKPFLQSYFIDLSSCGPMVLDA 100

Query: 86  LIKIKNEIDPTLTFRRSCREGICGSCAMNIDGCNGLACLTKIPSGNS--STITPLPHMYV 143
           L KIK E D +L++RRSCREGICGSC+MNIDG N +ACL  I +  S  + ITPLPHMYV
Sbjct: 101 LQKIKAEDDSSLSYRRSCREGICGSCSMNIDGTNTVACLKPIDADTSRPTIITPLPHMYV 160

Query: 144 IKDLVVDMTNFYNQYKSIEPWLKRKNPPQVPGKEILQSKKDRAKLDGMYECILCACCSTS 203
           IKDLVVD+TNFYNQY+SIEPWLK +  P+  G+E  QS  DR KLDG+YECILCACCS S
Sbjct: 161 IKDLVVDLTNFYNQYRSIEPWLKTRKKPE-DGREYRQSPADRKKLDGLYECILCACCSAS 219

Query: 204 CPSYWWNPESYLGPAALLHANRYFS 228
           CPSYWWNPE +LGPA L+HA R+ S
Sbjct: 220 CPSYWWNPEEFLGPAPLIHAYRWIS 244