Jatropha Genome Database

JcCB0198751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0198751.10 + phase: 1 /partial
         (578 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m004035 conserved hypothetical protein                          513   e-145
29848.m004543 DNA binding protein, putative                           380   e-106
29696.m000106 actin binding protein, putative                         360   e-99 
29827.m002591 DNA binding protein, putative                           340   1e-93

>30138.m004035 conserved hypothetical protein
          Length = 1550

 Score =  513 bits (1320), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 236/295 (80%), Positives = 257/295 (87%)

Query: 1   GDRRSQISDILSQYDMTVMDYPRQYEGCPMLPLEMIHHFLRSSESWLSLEGQQNVLLMHC 60
           GDRRSQISDILSQYDMTVMDYPRQYEGCPMLPLEMIHHFLRSSESWLSLEGQQNVLLMHC
Sbjct: 68  GDRRSQISDILSQYDMTVMDYPRQYEGCPMLPLEMIHHFLRSSESWLSLEGQQNVLLMHC 127

Query: 61  ERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKEXXXXXXXXXXXXXXXRYLQYI 120
           ERGGWPVLAFMLAGLLLYRKQY+GEQKTLEMVYKQAPKE               RYLQYI
Sbjct: 128 ERGGWPVLAFMLAGLLLYRKQYTGEQKTLEMVYKQAPKELLHLLSPLNPQPSQLRYLQYI 187

Query: 121 SRRNFGSEWPPSDTPLVLDCLMLRALPIFGGGKGCRPVVRVYGQDARKPANRTSKLLFST 180
           SRRN GS+WPPSDTPLVLDCLMLRALP+F GGKGCRPVVRV+GQD+ KPANRTSKLLFST
Sbjct: 188 SRRNLGSDWPPSDTPLVLDCLMLRALPLFEGGKGCRPVVRVFGQDSSKPANRTSKLLFST 247

Query: 181 SKAKKHLRHYSQDECLLVKIDIRCRIQGDVVLECIHLDEDLVHEEMIFRIMFHTAFVRAN 240
           SK KKH+RHY Q+EC+LVKID+RCR+QGDVV+ECIHLDEDLV EEMIFR+MFHTAFVRAN
Sbjct: 248 SKTKKHVRHYLQEECMLVKIDVRCRVQGDVVIECIHLDEDLVREEMIFRVMFHTAFVRAN 307

Query: 241 ILILCRDEIDILWDAKDQFPKEFKAEAVDMLSNNAIKEVTEDASGEFKDMEDKAN 295
           IL+LCRDEID +WDAKDQFPKEFKAE +    + A+ ++T   S E  +  D A+
Sbjct: 308 ILMLCRDEIDAMWDAKDQFPKEFKAEVLFADGDAAVPKLTTVVSNEDGNELDSAS 362



 Score =  194 bits (493), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 121/285 (42%), Positives = 147/285 (51%), Gaps = 26/285 (9%)

Query: 276 IKEVTEDASGEFKDMEDKANGGNSTTKMWGSKLPHIKLSVDHGRQKVEKVVPPSPKRQPT 335
           +KEV E  SGEFK+MEDKA+  N +TK+    LP +KL+VD GRQ+ EKV+PPSP RQ T
Sbjct: 512 MKEVAEYVSGEFKEMEDKADEENDSTKLSKFMLPQLKLTVDVGRQQQEKVMPPSPGRQTT 571

Query: 336 SNTKPVVADSAAVKQKIKQLEPLGTNGKQARPSTVPRWITPNKAPFANSMHVAHPPSRYN 395
           SN KP  ADS  V+QK+ +LEP G NGKQARP+TVPRW+ PNK PFANS  VAHPPSRYN
Sbjct: 572 SNKKPA-ADSTVVEQKVIELEPQGANGKQARPNTVPRWVPPNKVPFANSNLVAHPPSRYN 630

Query: 396 XXXXXXXXXXXXKDSNADSHVKASCDTTIPADLTTNELTSPPVVLPPLGATKLVXXXXXX 455
                       KD N D+ VKA   TT  AD  + E+TS P + P   + K +      
Sbjct: 631 SAPPALAFCVSPKDPNVDAPVKAPSYTTTLADSASGEVTSHPAISPTCTSLKTIPPCPPP 690

Query: 456 XXXXXXXXXL---------SNRFLPKTLVEAXXXXXXXXXXXXXXSTSFNRQNIEIASHH 506
                              S+ FLPK L +A                  +RQNIEI  +H
Sbjct: 691 APPPPPPSPPPPPPPPPLSSSTFLPKILGKAPPPPPPPPPPPLS-----SRQNIEIIPYH 745

Query: 507 ATXXXXXXXXXXXXXXXXXXXLASSNRQKIGMALXXXXXXXXWKY 551
           A+                      SNRQ IGM L        WK+
Sbjct: 746 ASPPAPPPPPPPL-----------SNRQNIGMVLPPAPPPTPWKF 779


>29848.m004543 DNA binding protein, putative
          Length = 1266

 Score =  380 bits (977), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 173/281 (61%), Positives = 216/281 (76%), Gaps = 3/281 (1%)

Query: 1   GDRRSQISDILSQYDMTVMDYPRQYEGCPMLPLEMIHHFLRSSESWLSLEGQQNVLLMHC 60
           G+ +S I  ILS+YDMTVMDYPR YEGCP+L +EMIHHFLRSSESWLSL  +QNVLLMHC
Sbjct: 68  GEHQSLIGSILSEYDMTVMDYPRHYEGCPLLTMEMIHHFLRSSESWLSLL-KQNVLLMHC 126

Query: 61  ERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKEXXXXXXXXXXXXXXXRYLQYI 120
           ERGGWPVLAFMLA LL+YRKQ+SGEQKTL+M+YKQAP+E               RYLQY+
Sbjct: 127 ERGGWPVLAFMLASLLIYRKQFSGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYV 186

Query: 121 SRRNFGSEWPPSDTPLVLDCLMLRALPIFGGGKGCRPVVRVYGQDARKPANRTSKLLFST 180
           SRRN GS+WPP D  L LDC++LR +P   G  GCRP+ R+YGQD    A+RT K+LFST
Sbjct: 187 SRRNVGSQWPPLDRALTLDCVILRVIPNMDGEGGCRPIFRIYGQDPLMAADRTPKVLFST 246

Query: 181 SKAKKHLRHYSQDECLLVKIDIRCRIQGDVVLECIHLDEDLVHEEMIFRIMFHTAFVRAN 240
            K  K +RHY Q    L+K+DI C +QGDVV+ECIH++ DL  E+MIFR+MF+TAF+R+N
Sbjct: 247 PKRSKLVRHYKQAVSDLIKLDIHCHVQGDVVMECIHVESDLEREQMIFRVMFNTAFIRSN 306

Query: 241 ILILCRDEIDILWDAKDQFPKEFKAEAV--DMLSNNAIKEV 279
           IL+L  +EID+LW+ KDQFPK+F+AE +  +M S +++  V
Sbjct: 307 ILMLNSEEIDMLWNVKDQFPKDFRAEVLFSEMHSTSSLATV 347


>29696.m000106 actin binding protein, putative
          Length = 1191

 Score =  360 bits (924), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 165/268 (61%), Positives = 206/268 (76%), Gaps = 4/268 (1%)

Query: 1   GDRRSQISDILSQYDMTVMDYPRQYEGCPMLPLEMIHHFLRSSESWLSLEGQQNVLLMHC 60
           G+  SQ++ +LS++DMT+M+YPRQYEGCP+L +E+IHHFLRS ESWLSL GQ N+LLMHC
Sbjct: 68  GETPSQLAHLLSEFDMTIMEYPRQYEGCPLLKMEVIHHFLRSGESWLSL-GQHNLLLMHC 126

Query: 61  ERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKEXXXXXXXXXXXXXXXRYLQYI 120
           ERGGWPVLAF+LA LL+Y KQYSGEQKTL+M+Y+QAP+E               RYLQY+
Sbjct: 127 ERGGWPVLAFVLASLLIYTKQYSGEQKTLDMIYRQAPRELVHFLSPLNPVPSQLRYLQYV 186

Query: 121 SRRNFGSEWPPSDTPLVLDCLMLRALPIFGGGKGCRPVVRVYGQDARKPANRTSKLLFST 180
           SRRN  SEWPP D  L LDC++LR +P F G  GCRPV R+YG     P++ +  ++  T
Sbjct: 187 SRRNVASEWPPLDRTLKLDCVILRFIPNFDGYGGCRPVFRIYGH---APSDESDNVVCLT 243

Query: 181 SKAKKHLRHYSQDECLLVKIDIRCRIQGDVVLECIHLDEDLVHEEMIFRIMFHTAFVRAN 240
            K  K +R Y Q EC LVKIDI CRIQGDVVLECI L++D+  E M+FR +F+TAF+R+N
Sbjct: 244 PKKGKIIRAYKQTECELVKIDINCRIQGDVVLECISLNDDMERELMMFRAVFNTAFIRSN 303

Query: 241 ILILCRDEIDILWDAKDQFPKEFKAEAV 268
           ILIL RDEIDILWDAK+QFPK+F+AE +
Sbjct: 304 ILILNRDEIDILWDAKNQFPKDFRAEIL 331


>29827.m002591 DNA binding protein, putative
          Length = 820

 Score =  340 bits (872), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 146/269 (54%), Positives = 205/269 (76%), Gaps = 1/269 (0%)

Query: 1   GDRRSQISDILSQYDMTVMDYPRQYEGCPMLPLEMIHHFLRSSESWLSLEGQQNVLLMHC 60
           G++RSQ ++IL QYD+TVMDYPRQYEGCP+LPL +I HFLR  E+WLSL   QN++L+HC
Sbjct: 68  GEKRSQFAEILCQYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCETWLSLGNHQNIILIHC 127

Query: 61  ERGGWPVLAFMLAGLLLYRKQYSGEQKTLEMVYKQAPKEXXXXXXXXXXXXXXXRYLQYI 120
           ERGGWP+LAF+LA  L++ K +SGE++TLE+V+++APK                RYLQY+
Sbjct: 128 ERGGWPILAFLLASFLIFSKLHSGERRTLELVHREAPKGFLQLLSPLNPFPSQLRYLQYV 187

Query: 121 SRRNFGSEWPPSDTPLVLDCLMLRALPIFGGGKGCRPVVRVYGQDARKPANRTSKLLFST 180
           +RRN   EWPP +  L LDC++LRA+P F   KGCRP++R++G++    +  ++++LFS 
Sbjct: 188 ARRNIAPEWPPPERALSLDCIILRAIPSFDSEKGCRPIIRIFGRNLHTKSGLSTQMLFSM 247

Query: 181 SKAKK-HLRHYSQDECLLVKIDIRCRIQGDVVLECIHLDEDLVHEEMIFRIMFHTAFVRA 239
           SK KK  LRHY Q +C ++KIDI+C +QGDVVLEC+HLD D   E M+FR+MF+TAF+R+
Sbjct: 248 SKRKKTTLRHYCQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRS 307

Query: 240 NILILCRDEIDILWDAKDQFPKEFKAEAV 268
           NIL+L  + +DILWD+K+++PK F+AE +
Sbjct: 308 NILMLNSENLDILWDSKERYPKGFRAEVL 336