Jatropha Genome Database

JcCB0198061.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0198061.10 - phase: 0 
         (226 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30032.m000458 conserved hypothetical protein                          221   2e-58
30055.m001607 conserved hypothetical protein                          109   1e-24

>30032.m000458 conserved hypothetical protein
          Length = 680

 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 134/219 (61%), Positives = 152/219 (69%), Gaps = 6/219 (2%)

Query: 1   MPRQ--SRAAMEELLPGKIRKRGCXXXXXXXXXIIQNYRFKRAILVGKRGGSSTPVPTWK 58
           MPRQ  SRA++EELLPGKIRKRGC         IIQNYRFKRAILVG RGGS+TPVPTW+
Sbjct: 1   MPRQNQSRASVEELLPGKIRKRGCSSSASSSSSIIQNYRFKRAILVGNRGGSTTPVPTWR 60

Query: 59  LMGTARTPSSALRAMDSPKYAASQNGGVIKGKLH-QQQQAAPVSARKLAATLWEMNEMPS 117
           LMGT RTPSSALRA DSPKYAASQNGG++KGKL  QQQQAAPVSARKLAATLWE+NEMPS
Sbjct: 61  LMGTTRTPSSALRARDSPKYAASQNGGIVKGKLMLQQQQAAPVSARKLAATLWELNEMPS 120

Query: 118 PKMKEMVXXXXXXXXXXXX--XXXXXXXXVXXXXXXXXXXXXXXXXXXERMERSGTGSRH 175
           PKMKE+V                      V                  ERM+RS      
Sbjct: 121 PKMKEVVGSEERRLRREGKGRERAGAARSVHSGSLPPHLSDPSHSPVSERMDRS-GTGSR 179

Query: 176 RRALSISQRLRLTDHNVGAFDSVSNASLMEVLKANKLIT 214
           RR+ SISQRLRLTD+NVGAFD++SNASL+E+  +++  T
Sbjct: 180 RRSSSISQRLRLTDYNVGAFDAISNASLLEIETSSRAQT 218


>30055.m001607 conserved hypothetical protein
          Length = 603

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/192 (40%), Positives = 103/192 (53%), Gaps = 29/192 (15%)

Query: 16  KIRKRGCXXXXXXXXXIIQNYRFKRAILVGKRGGSSTPVPTWKLMGTARTPSSALRAMDS 75
           KIRKRG          I+Q YRFKRAILVGKRGGS+TPVPTWK   + ++P+ ++   +S
Sbjct: 10  KIRKRG--NSSSSSSSIVQRYRFKRAILVGKRGGSTTPVPTWKT--STKSPTLSMPNAES 65

Query: 76  PKYAASQNGGVIKGKLHQQQQAAPVSARKLAATLWEMNEMPSPKMKEMVXXXXXXXXXXX 135
            K   SQ+GG  K         A VSARKLAATLWE+N++PSPK  E+            
Sbjct: 66  TKCPPSQSGGKTK--------EASVSARKLAATLWEINKIPSPKNLELAGDTKELRSG-- 115

Query: 136 XXXXXXXXXVXXXXXXXXXXXXXXXXXXERMERS-GTGSRHRRALSISQRLRLTDHNVGA 194
                                       E+M+RS G G R RRA  +++++ L+D+++  
Sbjct: 116 ----------EKVARFPHLSDPSYTPISEKMDRSRGNGHR-RRASLVTKKVHLSDYHL-- 162

Query: 195 FDSVSNASLMEV 206
            DSV NAS ME+
Sbjct: 163 -DSVDNASFMEM 173