Jatropha Genome Database

JcCB0193291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0193291.10 - phase: 1 /pseudo/partial
         (218 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29751.m001884 ubiquinone biosynthesis protein, putative               226   4e-60
30174.m009092 ubiquinone biosynthesis protein, putative               158   2e-39
29848.m004584 hypothetical protein                                     78   3e-15

>29751.m001884 ubiquinone biosynthesis protein, putative
          Length = 230

 Score =  226 bits (577), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/129 (82%), Positives = 118/129 (91%)

Query: 14  GSAIGALVDPRRADFIAALGETTGKPAFEKVLQRMKRSPEGRAVVLERPHVISAEVRHAW 73
           GSA+GAL+DPRRAD IAALGETTGKPAFE+VLQRMK SPEGRAV+L+RP V+SA + +AW
Sbjct: 21  GSALGALLDPRRADLIAALGETTGKPAFERVLQRMKSSPEGRAVLLDRPRVVSANIGYAW 80

Query: 74  DLPENTYGAAYARFMGSTNFSPDDRPPVRFMDTDELAYVALRAREPQDFWHTLFDLPTNL 133
           DLP NT+GAAYARFMGS NFSPDDRP VRFMDTDELAYVA+RARE  DFWHTLFDLPTNL
Sbjct: 81  DLPANTFGAAYARFMGSRNFSPDDRPLVRFMDTDELAYVAMRAREVHDFWHTLFDLPTNL 140

Query: 134 ICESALKVI 142
           + ESALKVI
Sbjct: 141 VGESALKVI 149


>30174.m009092 ubiquinone biosynthesis protein, putative
          Length = 199

 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 74/90 (82%), Positives = 79/90 (87%)

Query: 53  EGRAVVLERPHVISAEVRHAWDLPENTYGAAYARFMGSTNFSPDDRPPVRFMDTDELAYV 112
           E  AV+L+RP V+SA V HAWDLP NT+GAAYARFMGS NFSPDDRPPVRFMDTDELAYV
Sbjct: 29  EEVAVLLDRPRVVSANVGHAWDLPANTFGAAYARFMGSRNFSPDDRPPVRFMDTDELAYV 88

Query: 113 ALRAREPQDFWHTLFDLPTNLICESALKVI 142
            +RARE  DFWHTLFDLPTNLI ESALKVI
Sbjct: 89  TMRAREVHDFWHTLFDLPTNLIGESALKVI 118


>29848.m004584 hypothetical protein
          Length = 158

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 58/121 (47%), Gaps = 53/121 (43%)

Query: 14  GSAIGALVDPRRADFIAALGETTGKPAFEKVLQRMKRSPEGRAVVLERPHVISAEVRHAW 73
            SA+ AL+DPR       +GETTGKPAFE +L                            
Sbjct: 30  SSALSALIDPR-------IGETTGKPAFEGIL---------------------------- 54

Query: 74  DLPENTYGAAYARFMGSTNFSPDDRPPVRFMDTDELAYVALRAREPQDFWHTLFDLPTNL 133
                              ++PD+RPPV FMDTD+LAY A+RA E  DFWHT+FD PTNL
Sbjct: 55  ------------------FWTPDNRPPVCFMDTDDLAYGAMRAHEVHDFWHTIFDPPTNL 96

Query: 134 I 134
           I
Sbjct: 97  I 97