Jatropha Genome Database

JcCB0192641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0192641.10 + phase: 0 /pseudo
         (234 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30138.m003899 conserved hypothetical protein                          307   3e-84
30138.m003913 Transcription factor BIM1, putative                     161   3e-40
29790.m000843 Transcription factor BIM1, putative                     125   2e-29

>30138.m003899 conserved hypothetical protein
          Length = 348

 Score =  307 bits (787), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 147/203 (72%), Positives = 166/203 (81%), Gaps = 10/203 (4%)

Query: 1   ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWTSEPTKLMPWRNSHWRV 60
           ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGW+SEPTKLMPWRNSHWRV
Sbjct: 73  ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWSSEPTKLMPWRNSHWRV 132

Query: 61  QSFMGHPQTVKNGSGPGLTFPGKFDENNIAISPSMLTSTQNLVEPDTSRDIASKGMERQP 120
           QSF+GHPQ +KNGSGPG T PGKFDEN IAI+P+MLT  QN VE D SRD+  K M+R P
Sbjct: 133 QSFIGHPQPIKNGSGPGSTIPGKFDENTIAINPTMLTGAQNQVESDPSRDVTCKAMDRHP 192

Query: 121 ELANKVMPLPMSLQTTMPT----------PVQSDGVVANPLQQSVSGVHLADFPVSGDAP 170
           E+ANKV+  P+SLQTT+P           PV SDG +A+PLQQ V+    ADFP++  A 
Sbjct: 193 EVANKVLLHPVSLQTTIPIPVHSDGAIAHPVHSDGAIAHPLQQPVTDAQSADFPITSGAL 252

Query: 171 NQQEKVPIEGGTISISSVYSQGV 193
           NQQE++ IEGGTISISSVYSQG+
Sbjct: 253 NQQEELTIEGGTISISSVYSQGL 275


>30138.m003913 Transcription factor BIM1, putative
          Length = 567

 Score =  161 bits (407), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/208 (44%), Positives = 125/208 (60%), Gaps = 16/208 (7%)

Query: 1   ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWTSEPTKLMPWRNSHWRV 60
           +LR+LIPH DQKRD ASFLLEVIEY+Q+L EKV KYEGSYQ W +EP KL+PWRN    V
Sbjct: 285 MLRELIPHGDQKRDKASFLLEVIEYIQFLHEKVHKYEGSYQRWNNEPAKLVPWRNGSRSV 344

Query: 61  QSFMGHPQTVKNGSGPGLTFPGKFDENNIAISPSMLTSTQNLVEPDTSRDIASKGMERQP 120
           +S++   +   +G+ P L F  K +E NI +SPS+  S QN VE D +    +  ++  P
Sbjct: 345 ESYVDQSRGSNSGASPALLFAAKLEEKNINLSPSVPGSAQNRVESDVN-SATTFMVDHYP 403

Query: 121 ELANKVMPLPMSLQTTMPTPVQSDGVVANPLQQSVSGV-HLADFPVSGDAPN-------- 171
            + NK MP P+SLQ       ++ G VA    + VS V + A  P S             
Sbjct: 404 GMTNKGMPFPVSLQPNFFNCGRNGGAVAQLPPRLVSDVENTASQPESQSNQTRSCTTEGA 463

Query: 172 ------QQEKVPIEGGTISISSVYSQGV 193
                 +++++ IEGGTI+ISSVYSQG+
Sbjct: 464 VAVDKLKEQQLSIEGGTINISSVYSQGL 491


>29790.m000843 Transcription factor BIM1, putative
          Length = 311

 Score =  125 bits (313), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 72/106 (67%), Gaps = 14/106 (13%)

Query: 1   ILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQGWTSEPTKLMPWRNSHWRV 60
           ILRDLIP +DQKRD ASFLLEVIEY+Q+LQEK+  YEG +QGWT EPTKL PW+N H  V
Sbjct: 63  ILRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLHMYEGPFQGWTQEPTKLTPWKNHHTSV 122

Query: 61  QSFMGHPQTVKNGSGPGLTFPGKFDENNIAISPSMLTSTQNLVEPD 106
           +S + H Q +KNGS P +T              +MLT+  N +E D
Sbjct: 123 ESLVDHSQVLKNGSAPEVT--------------AMLTNVHNSIESD 154