Jatropha Genome Database

JcCB0192111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0192111.10 + phase: 2 /pseudo/partial
         (263 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30003.m000326 Synaptic glycoprotein SC2, putative                     230   6e-61
27798.m000584 3-oxo-5-alpha-steroid 4-dehydrogenase, putative          52   3e-07

>30003.m000326 Synaptic glycoprotein SC2, putative
          Length = 310

 Score =  230 bits (586), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 140/255 (54%), Positives = 158/255 (61%), Gaps = 23/255 (9%)

Query: 1   QRPTIPLLXGSKERSVVLNKKKSXGLLXW----EDKITVVFKDLGPXVSYCIILVFLGVH 56
           QR T+PL  GSK+R  VLN KKS  L  +     D ITVVFKDLGP VSY  +  F  + 
Sbjct: 45  QRLTLPLPPGSKDRPTVLNYKKS--LKDYCDGNSDNITVVFKDLGPQVSYRTLFFFEYLG 102

Query: 57  ESFRSXXXXXXXXXXXXXXXQGRTCHQTSXDI----CFLYFKCIMETLFVLXFSHA-PPL 111
                               + R  H          CF YFK IMET FV  FSHA  PL
Sbjct: 103 PLILYPVFYFFPVYKYFGYKEERVIHPVQTYAMYYWCFHYFKRIMETFFVHRFSHATSPL 162

Query: 112 CNVFRNCSSYWTFGCYMAYYVNHPLYAPVSDLQXKIGFWLWF--DLSS--CKLLLPYLVG 167
            NVFRNC+ YWTFG Y+AYYVNHPLY PV DLQ KIGF       +++  C +LL     
Sbjct: 163 SNVFRNCAYYWTFGSYIAYYVNHPLYTPVGDLQMKIGFGFGLICQIANFYCHILL----- 217

Query: 168 KKKKNLCSPDWSGGYQIPRGFLFNMVTCSNYTTEVYQWLGFNIAMQTVAGYFFLVVASMI 227
              KNL SPD SGGYQIP GFLFN+VTC+NYTTE+YQWLGFNIA QTVAGY FLVVA+ I
Sbjct: 218 ---KNLRSPDGSGGYQIPHGFLFNIVTCANYTTEIYQWLGFNIATQTVAGYIFLVVAASI 274

Query: 228 MTNWAFANHRQLTKV 242
           MTNWA A HR+L K+
Sbjct: 275 MTNWALAKHRRLRKL 289


>27798.m000584 3-oxo-5-alpha-steroid 4-dehydrogenase, putative
          Length = 263

 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query: 181 GYQIPRGFLFNMVTCSNYTTEVYQWLGFNIAMQTVAGYFFLVVASMIMTNWAFANHR 237
           GY++PRG LF++V+C NY  E+ +WLG+ +   +  G+ F +  S  +   A ANH+
Sbjct: 185 GYKVPRGGLFDLVSCPNYFGEIVEWLGWTLMTWSWVGFGFFLYTSANLVPRAVANHK 241