Jatropha Genome Database

JcCB0190821.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0190821.20 - phase: 2 /partial
         (66 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014026 conserved hypothetical protein                           97   1e-21
28093.m000125 conserved hypothetical protein                           62   6e-11
29912.m005506 conserved hypothetical protein                           56   4e-09
29863.m001061 conserved hypothetical protein                           55   5e-09

>30170.m014026 conserved hypothetical protein
          Length = 267

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 51/64 (79%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLDAQAIPATRLSK 60
           YVPTNHLYVGDIFL++  DIMRPNLSVR          MSVPQI+TT+DAQAIPA RLSK
Sbjct: 202 YVPTNHLYVGDIFLISMKDIMRPNLSVREGIEIIISGGMSVPQILTTMDAQAIPAARLSK 261

Query: 61  FPSS 64
           +PS+
Sbjct: 262 YPSA 265


>28093.m000125 conserved hypothetical protein
          Length = 258

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVRXXXXXXXXXXMSVPQIMTTLDAQAIPATRL 58
           +VPTNHLY+GDIFL+N+ +I+RPNLS+R          M++PQ++T L+  A  + R+
Sbjct: 195 FVPTNHLYIGDIFLVNSKEIIRPNLSIREGIEIIVSGGMTMPQMITPLERVARQSERI 252


>29912.m005506 conserved hypothetical protein
          Length = 242

 Score = 55.8 bits (133), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/28 (78%), Positives = 27/28 (96%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVR 28
           YVPTNHLY+GDIFL+NT D++RP+LSVR
Sbjct: 206 YVPTNHLYIGDIFLVNTKDVIRPSLSVR 233


>29863.m001061 conserved hypothetical protein
          Length = 264

 Score = 55.5 bits (132), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/28 (75%), Positives = 27/28 (96%)

Query: 1   YVPTNHLYVGDIFLLNTNDIMRPNLSVR 28
           YVPTNHLY+GDIFL+N+ +I+RPNLS+R
Sbjct: 195 YVPTNHLYIGDIFLVNSEEIIRPNLSIR 222