Jatropha Genome Database

JcCB0190531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0190531.10 - phase: 0 /partial
         (165 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29308.m000180 RNA polymerase II transcription factor B subunit, ...   220   2e-58
29908.m006174 hypothetical protein                                     72   2e-13

>29308.m000180 RNA polymerase II transcription factor B subunit,
           putative
          Length = 266

 Score =  220 bits (561), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/109 (95%), Positives = 107/109 (98%)

Query: 57  IQRVFRSGPLNPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGSHNSAFLQ 116
           IQR+FRSGPL+PQPRILCLQGSPDGPEQYVAVMN+IFSAQRSMVPIDSCYVG HNSAFLQ
Sbjct: 133 IQRIFRSGPLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCYVGGHNSAFLQ 192

Query: 117 QASYITGGVYVKPQHLDGLFQYLVTVFATDLHCRSFLQLPRPAGVDFRA 165
           QASYITGGVYVKPQHLDGLFQYLVTVFATDLH RSFLQLPRPAGVDFRA
Sbjct: 193 QASYITGGVYVKPQHLDGLFQYLVTVFATDLHSRSFLQLPRPAGVDFRA 241


>29908.m006174 hypothetical protein
          Length = 159

 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 65/151 (43%), Gaps = 54/151 (35%)

Query: 46  TGYNSCNYVYD---------------------IQR----VFRSGPLNPQPRILC----LQ 76
           +GYNSC+YVYD                     +Q+    + R   L      L     L 
Sbjct: 26  SGYNSCDYVYDSSLIANRSSEDGKIPTLYSELLQKLEDFIIRDEKLGKGEEFLKETLPLH 85

Query: 77  GSPDGPEQYVAVM--NAIFSAQRSMVPIDSCYVGSHNSAFLQQASYITGGVYVKPQHLDG 134
            S D    + A++  + +       VPIDSCYVG HNSAFLQQ                 
Sbjct: 86  CSQDPCLWHFALLIPDTMVRKNEGKVPIDSCYVGGHNSAFLQQ----------------- 128

Query: 135 LFQYLVTVFATDLHCRSFLQLPRPAGVDFRA 165
                 TV ATDLH R+ LQLPRPA VDFRA
Sbjct: 129 ------TVLATDLHSRNCLQLPRPADVDFRA 153