Jatropha Genome Database

JcCB0189041.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0189041.20 - phase: 2 /partial
         (196 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29598.m000468 Light-inducible protein CPRF-2, putative                295   7e-81
29883.m001986 DNA binding protein, putative                           110   5e-25
28226.m000857 DNA binding protein, putative                            78   3e-15

>29598.m000468 Light-inducible protein CPRF-2, putative
          Length = 453

 Score =  295 bits (756), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 147/185 (79%), Positives = 164/185 (88%), Gaps = 3/185 (1%)

Query: 15  KQAHLTELETQVAQLRVENSSLLKRLSDISNKYNDASVDNRVLKADVETLRAKVKMAEET 74
           KQAHLTELETQVAQLRVENSSLLKRL+DIS+KYN+++VDNRVLKADVETLRAKVKMAEET
Sbjct: 269 KQAHLTELETQVAQLRVENSSLLKRLTDISHKYNESAVDNRVLKADVETLRAKVKMAEET 328

Query: 75  VKRITGLNPLSHSMPEISTISMPSFDGSPSDTLTDAAVPIQDEPK-RLYQLPNNPLSTRD 133
           VKRITGLN L H++PE+ST+SMPSFDGSPSDT TDAAVP+QD+ + + YQ PNNPLST D
Sbjct: 329 VKRITGLNSLFHTIPEMSTMSMPSFDGSPSDTSTDAAVPVQDDTEHQFYQPPNNPLSTHD 388

Query: 134 PRVNNGLTNISSAENIQPPSGTAGLAGNKIGRTASLQRVASLEHLQKRICG--TPCGPQS 191
           PRVNN L +ISS EN+QP SG AGL GNK+GRTASLQRVASLEHLQKRI G  TPC  QS
Sbjct: 389 PRVNNALADISSVENVQPHSGAAGLGGNKMGRTASLQRVASLEHLQKRIRGGATPCETQS 448

Query: 192 NVEQQ 196
           + E Q
Sbjct: 449 SGEHQ 453


>29883.m001986 DNA binding protein, putative
          Length = 441

 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/199 (38%), Positives = 103/199 (51%), Gaps = 35/199 (17%)

Query: 15  KQAHLTELETQVAQLRVENSSLLKRLSDISNKYNDASVDNRVLKADVETLRAKVKMAEET 74
           KQA L ELE QV QLR E +SLL RL+DI+ K ++ASVDNR+L A++ETLR KVKMAE+ 
Sbjct: 237 KQAQLNELEAQVGQLRDERTSLLTRLTDINKKCDEASVDNRILNANIETLRTKVKMAEDQ 296

Query: 75  VKRITGLNPLSHSMPEISTISMPSFDGSPSDTLTDAAVPIQDEPKRLYQ----------- 123
           VKR+TGLNP+  +   +  + M  F    +D   + AVP+Q      +            
Sbjct: 297 VKRVTGLNPMVLARSNMPNMGM-QFVAGQTDVSANVAVPMQPNNNHFFHHSVPDLTSGAP 355

Query: 124 --------LPNN---PLSTRDPRVNNGLTNISSAENIQPPSGTAGLAGNKIGRTASLQRV 172
                    PNN   PL+T  P VNNG +NI     +Q  +G   +             V
Sbjct: 356 HLQRLSNSCPNNSVTPLATPLP-VNNGTSNIGGIAPLQQVTGAQNMTD-----------V 403

Query: 173 ASLEHLQKRICGTPCGPQS 191
             L+H+QK+   T   P S
Sbjct: 404 PPLQHVQKQTGPTVSPPAS 422


>28226.m000857 DNA binding protein, putative
          Length = 225

 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 68/114 (59%), Gaps = 17/114 (14%)

Query: 15  KQAHLTELETQVAQLRVENSSLLKRLSDISNKYNDASVDNRVLKADVETLRAKVKMAEET 74
           KQAHL ++E+QV QL  ENSSL K+LS  + ++ DA  +NRVLK+DVE LRAKVK+AE+ 
Sbjct: 114 KQAHLQDIESQVYQLSGENSSLYKQLSFATQQFRDADTNNRVLKSDVEALRAKVKLAEDM 173

Query: 75  VKR------------ITGLNPLSHSMPEISTISMPSFDGSPSDTLTDAAVPIQD 116
           V R            +  +N L +  P I TI+ P     P D+ +DA   + D
Sbjct: 174 VTRGGSLSCSMNIQLLQSINNLPNVSPTI-TINAP----PPLDSTSDAVSSLTD 222