Jatropha Genome Database

JcCB0189041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0189041.10 + phase: 1 /pseudo/partial
         (85 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29598.m000467 pentatricopeptide repeat-containing protein, putative    65   7e-12

>29598.m000467 pentatricopeptide repeat-containing protein, putative
          Length = 313

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/42 (71%), Positives = 36/42 (85%)

Query: 38  NLVCSDGPSENYVAFSSVFASAERWEDVEMVRKEMKVGRIET 79
           N V SD  SE+YVA S+V+ASAERWEDVE++RKEMKV R+ET
Sbjct: 253 NSVESDDSSEDYVALSNVYASAERWEDVEILRKEMKVKRLET 294