Jatropha Genome Database

JcCB0188331.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0188331.10 + phase: 2 /pseudo/partial
         (139 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006240 conserved hypothetical protein                          176   2e-45
30142.m000632 Rho GTPase activator, putative                          152   3e-38

>29908.m006240 conserved hypothetical protein
          Length = 980

 Score =  176 bits (447), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/105 (80%), Positives = 90/105 (85%), Gaps = 5/105 (4%)

Query: 21  GVKVEGILRQAAAVDDVKHRIREYEQGKTEFAADEDAHVIGDCVKYFLRELPSSPVPASC 80
           GVKVEGILRQAAAVDDV+HRIREYEQG+TEF+A EDAHVI DCVKYFLRELPSSPVPASC
Sbjct: 228 GVKVEGILRQAAAVDDVEHRIREYEQGRTEFSAGEDAHVIADCVKYFLRELPSSPVPASC 287

Query: 81  CNALLQSFR-----TDRANRVNNMRVAILENFPEPNRRLLQRYLM 120
           C ALL++FR      D  NRVN MR AILE FPEPNRRLLQR L+
Sbjct: 288 CKALLEAFRKSIGGKDHNNRVNAMREAILETFPEPNRRLLQRILL 332


>30142.m000632 Rho GTPase activator, putative
          Length = 821

 Score =  152 bits (385), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 84/100 (84%), Gaps = 1/100 (1%)

Query: 21  GVKVEGILRQAAAVDDVKHRIREYEQGKTEFAADEDAHVIGDCVKYFLRELPSSPVPASC 80
           G KVEGILRQ+A V++V+ R++EYEQGKT+F  DEDAHV+ DCVK+ LRELPSSPVPASC
Sbjct: 140 GTKVEGILRQSADVEEVERRVQEYEQGKTDFEPDEDAHVVADCVKHVLRELPSSPVPASC 199

Query: 81  CNALLQSFRTDRAN-RVNNMRVAILENFPEPNRRLLQRYL 119
           C ALL++++ DR   R+N MR AILE FPEPNRRLLQR L
Sbjct: 200 CTALLEAYKIDRKEARINAMRSAILETFPEPNRRLLQRIL 239