Jatropha Genome Database

JcCB0187931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0187931.10 - phase: 1 /partial
         (229 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014171 E2F4,5, putative                                        276   6e-75
30055.m001619 E2F4,5, putative                                        160   4e-40
28324.m000396 E2F4,5, putative                                        153   8e-38

>30170.m014171 E2F4,5, putative
          Length = 386

 Score =  276 bits (706), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 139/205 (67%), Positives = 159/205 (77%), Gaps = 26/205 (12%)

Query: 26  RGCDGGGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLFMTE 85
           +G D  GSKEL+ HV  LK EVESLHAE+HRLDESIR+KQELLR+LEEDEN +RYLFMTE
Sbjct: 203 KGYDDCGSKELEDHVTELKTEVESLHAEDHRLDESIREKQELLRALEEDENKKRYLFMTE 262

Query: 86  EDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGCPQYKMIVRSNTGPIDLYLLSKYNQ 145
           EDITSL C+QN+TL+AIKAPQASYLEVPDPDEDIG PQYKMIVRS TGPID+YLLS    
Sbjct: 263 EDITSLACYQNRTLLAIKAPQASYLEVPDPDEDIGSPQYKMIVRSTTGPIDVYLLS---- 318

Query: 146 QHEDVAVKQVNPLTSTSPKCCPHRMETEGLSFE-QHYQNNNAEMFNSLYSESSGIQKIIP 204
                                P R+E EGLS E Q  Q+ N E+++S++SESSG+QKI P
Sbjct: 319 ---------------------PRRVELEGLSLEHQQNQSKNPEVYSSMHSESSGVQKITP 357

Query: 205 SDCDIDDDYWFRSNPEVSTSELWGN 229
           SDCDIDDDYWFRS+PEVS SELWG+
Sbjct: 358 SDCDIDDDYWFRSDPEVSISELWGS 382


>30055.m001619 E2F4,5, putative
          Length = 414

 Score =  160 bits (406), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/194 (47%), Positives = 124/194 (63%), Gaps = 10/194 (5%)

Query: 26  RGCDGGGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLFMTE 85
           +G D     E D  V  L+AEVE+L+ +E RLDE IR+ QE LR L EDENNQ++LF+TE
Sbjct: 202 KGLDVSRPGEADESVASLQAEVENLNIDERRLDEQIREMQERLRDLSEDENNQKWLFVTE 261

Query: 86  EDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGCPQ--YKMIVRSNTGPIDLYLLSKY 143
           EDI SLPCFQN+TLIAIKAP  + LEVPDPDE +  PQ  Y++++RS  GPID+YL+S++
Sbjct: 262 EDIKSLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQF 321

Query: 144 NQQHEDVAVKQVNPLTSTSPKC----CPHRMETEGLSFEQHYQNNNAEMFNSLYSES--- 196
            ++ E++   +  P   +S        P  +  +G   E   Q ++A+   S  S S   
Sbjct: 322 EEKFEEIHGAEPPPTYPSSSSFNENPAPTVVPEDGRGKEIEMQGDDAQRMCSELSTSQDF 381

Query: 197 -SGIQKIIPSDCDI 209
            SGI KI+PSD DI
Sbjct: 382 VSGIMKIVPSDVDI 395


>28324.m000396 E2F4,5, putative
          Length = 451

 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 20/204 (9%)

Query: 26  RGCDGGGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLFMTE 85
           +G D     E D   + L+AE+E L  EE RLD+  R+ QE LR L EDENNQ++LF+TE
Sbjct: 219 KGVDTSRPGEPDGDASLLQAEIEKLSMEERRLDDQTREMQERLRELIEDENNQKWLFVTE 278

Query: 86  EDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGCPQ--YKMIVRSNTGPIDLYLLSKY 143
           EDI SLPCFQNQTLIA+KAP  + LEVPDPDE +  PQ  Y++I+RS+ GPID+YL+S++
Sbjct: 279 EDIKSLPCFQNQTLIAVKAPHGTTLEVPDPDEAVDYPQRRYRIILRSSMGPIDVYLVSQF 338

Query: 144 NQQHEDVAVKQVNPLTSTSPKCCPHRMETEGLSFEQHYQNNNAEMFNSLYSESSGIQKII 203
            +  E+   +        S   C + +  + +  EQ  Q                 +++ 
Sbjct: 339 EENFEEANGEPSTSFPHAS-SSCSNEIPKKQVINEQKIQ-----------------KRVE 380

Query: 204 PSDCDIDDDYWFRSNPEVSTSELW 227
           P     D DYW  S+ +VS +++W
Sbjct: 381 PQMQQNDADYWLLSDADVSITDMW 404