Jatropha Genome Database

JcCB0187481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0187481.10 + phase: 0 /partial
         (147 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29583.m000187 conserved hypothetical protein                          193   3e-50

>29583.m000187 conserved hypothetical protein
          Length = 243

 Score =  193 bits (490), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 103/139 (74%), Positives = 120/139 (86%), Gaps = 7/139 (5%)

Query: 1   MAFPSRLLSRSKQLYGSQVILQQDH-AIPVRYFAKKADPPSQKGDSPPRLKGDELLKGIF 59
           MAF SRLLSRSKQ+YG++VI+QQ    IPVRYFAKKAD           LKGDE+LK +F
Sbjct: 1   MAFSSRLLSRSKQVYGNRVIMQQQELVIPVRYFAKKADAAPPA------LKGDEMLKNVF 54

Query: 60  LEVKKKYETAVGILKKEKITIAPEDPSAVSQYAKIMKTIREKAGLFSESERIKFTIETQT 119
           L+VK+K+ETA+GIL+KEKITIAPEDP+AVSQYAK+MKTIREKA LFSES+RIK+TIET+T
Sbjct: 55  LDVKRKFETAIGILRKEKITIAPEDPAAVSQYAKVMKTIREKADLFSESQRIKYTIETRT 114

Query: 120 VDIPDARTYLLTLKEIRIK 138
            DIPDARTYLLTL+EIRIK
Sbjct: 115 KDIPDARTYLLTLREIRIK 133