Jatropha Genome Database

JcCB0186801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186801.10 + phase: 2 /pseudo/partial
         (348 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29912.m005468 conserved hypothetical protein                          482   e-137

>29912.m005468 conserved hypothetical protein
          Length = 509

 Score =  482 bits (1241), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 237/301 (78%), Positives = 257/301 (85%), Gaps = 4/301 (1%)

Query: 48  KNLLHASSQKQDSSLGSQISDSVKPQENFFNDLSKANIDADASVNLKNRGLWVSGSNRPA 107
           KN LHAS+QKQDSS GSQ++DSVKP ENFF+DLSKAN   DAS+NL +RGLW    NRPA
Sbjct: 48  KNFLHASTQKQDSSTGSQMNDSVKPLENFFSDLSKANASTDASINLNSRGLWGPSGNRPA 107

Query: 108 EIEEEKRPEAGNKRKMLFDDINNQKKQERDAHHSDVHDKKASHISITTEDGSTAENEDVA 167
           E EEEK PEAG+KRKMLFD+INNQKK ERD HHSD+HDKKA HISITTEDGSTAENEDVA
Sbjct: 108 ETEEEKMPEAGSKRKMLFDEINNQKKHERDIHHSDLHDKKALHISITTEDGSTAENEDVA 167

Query: 168 ESEVEGSTSRLLSHHDVGSKRFIGVGAPSEVPKEVRGFSDSGVIDLQGQKRPNGSSETEI 227
           ESEVEGS+S+L SHHD  SKR IGV    EV KEVRGFSDS V+DL GQKRPNGSSETEI
Sbjct: 168 ESEVEGSSSQLASHHDDASKRLIGV----EVAKEVRGFSDSSVVDLHGQKRPNGSSETEI 223

Query: 228 KHGNLNYGVPFSVRPVNIMNFPYSFPIKESNCIGIPNTSGPPLSGMMQVVPTSNGEHQTG 287
           K+GNLNYGVPFSVRPVNIMN PYSFPI ESN IG+P TSG PL GM+QV+PTSNGE + G
Sbjct: 224 KNGNLNYGVPFSVRPVNIMNMPYSFPITESNSIGVPGTSGHPLPGMVQVMPTSNGEQRPG 283

Query: 288 TQSASPGNLPVTFGYSPVQLPTLDKDNSWSLVSHLQQFHPSYAGRGPSNSDKPNEGLKTV 347
            QS +PGNLP  FGYSP+QLPTLDKDNSW LVSHLQQFHPSYAGRG SNSDK N+GLK  
Sbjct: 284 AQSVNPGNLPGMFGYSPIQLPTLDKDNSWGLVSHLQQFHPSYAGRGSSNSDKQNDGLKIA 343

Query: 348 P 348
           P
Sbjct: 344 P 344