Jatropha Genome Database

JcCB0186601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186601.10 - phase: 0 
         (63 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014175 conserved hypothetical protein                           80   2e-16
29830.m001395 conserved hypothetical protein                           71   1e-13

>30170.m014175 conserved hypothetical protein
          Length = 208

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/47 (82%), Positives = 42/47 (89%)

Query: 4  EEGVVVIKRAEIDTRPPFRSVKEAVTLFGEKVLAGELYANKLKEVII 50
          EEG V+IK+AEIDTR PFRSVKEAVTLFGEKVLAGEL ANK KE+ I
Sbjct: 6  EEGAVIIKKAEIDTRAPFRSVKEAVTLFGEKVLAGELSANKFKEMHI 52


>29830.m001395 conserved hypothetical protein
          Length = 219

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/49 (73%), Positives = 44/49 (89%), Gaps = 1/49 (2%)

Query: 1  MDTEEG-VVVIKRAEIDTRPPFRSVKEAVTLFGEKVLAGELYANKLKEV 48
          M+TEE  +VV+ RAEIDTR PF SVKEAV+LFGE+VLAGE+YANKLK++
Sbjct: 1  METEERRLVVMGRAEIDTRAPFGSVKEAVSLFGERVLAGEIYANKLKQM 49