Jatropha Genome Database

JcCB0186071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186071.10 - phase: 0 
         (67 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29838.m001690 mads box protein, putative                              110   1e-25
29596.m000699 mads box protein, putative                               89   4e-19
30147.m014133 mads box protein, putative                               84   1e-17
29804.m001536 mads box protein, putative                               84   1e-17
30138.m003939 mads box protein, putative                               83   3e-17
30174.m008934 mads box protein, putative                               81   1e-16
29908.m005982 mads box protein, putative                               80   2e-16
30221.m002218 mads box protein, putative                               79   3e-16
29782.m000119 Floral homeotic protein DEFICIENS, putative              79   5e-16
29648.m001978 mads box protein, putative                               77   1e-15
29907.m000663 mads box protein, putative                               77   2e-15
30170.m013776 mads box protein, putative                               76   3e-15
28348.m000077 mads box protein, putative                               75   9e-15
29693.m002039 mads box protein, putative                               72   5e-14
30138.m004061 mads box protein, putative                               71   9e-14
29813.m001508 mads box protein, putative                               70   3e-13
29613.m000367 mads box protein, putative                               69   6e-13
27866.m000233 mads box protein, putative                               67   2e-12
30099.m001672 mads box protein, putative                               66   3e-12
29693.m002042 mads box protein, putative                               66   3e-12
30099.m001671 mads box protein, putative                               65   5e-12
29693.m002041 mads box protein, putative                               64   2e-11
28830.m000229 mads box protein, putative                               63   3e-11
29739.m003627 mads box protein, putative                               63   3e-11
29838.m001672 mads box protein, putative                               59   3e-10
29653.m000299 mads box protein, putative                               55   7e-09
27893.m000228 mads box protein, putative                               51   1e-07
29912.m005524 mads box protein, putative                               50   2e-07
28180.m000391 mads box protein, putative                               50   3e-07
30190.m010925 conserved hypothetical protein                           47   1e-06

>29838.m001690 mads box protein, putative
          Length = 61

 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/61 (86%), Positives = 58/61 (95%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSSS 60
          M R+KI+IKKIDNITARQVTFSKRRRGLFKKA ELS LCDAE+AL+VFSATGKLFEY+SS
Sbjct: 1  MTRQKIQIKKIDNITARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSATGKLFEYASS 60

Query: 61 R 61
          R
Sbjct: 61 R 61


>29596.m000699 mads box protein, putative
          Length = 262

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 53/60 (88%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSSS 60
          M R KI I++IDN T+RQVTFSKRR GL KKA+EL++LCDAEV +++FS+TGKL+++SSS
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSSS 60


>30147.m014133 mads box protein, putative
          Length = 213

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 51/60 (85%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSSS 60
          M R KI++++I+N T+RQVTFSKRR GL KKA ELSVLCDAEVA+I+FS  G+L E++S+
Sbjct: 1  MVRGKIQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLSEFASN 60


>29804.m001536 mads box protein, putative
          Length = 266

 Score = 84.0 bits (206), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 51/60 (85%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSSS 60
          M R KI I++IDN T+RQVTFSKRR GL KKA ELS+LCDAEV +I+FS+T KL++Y+S+
Sbjct: 28 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIIFSSTSKLYDYAST 87


>30138.m003939 mads box protein, putative
          Length = 244

 Score = 82.8 bits (203), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 49/59 (83%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSS 59
          M R ++++K+I+N   RQVTFSKRR GL KKA E+SVLCDAEVALIVFS  GKLFEYS+
Sbjct: 1  MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59


>30174.m008934 mads box protein, putative
          Length = 244

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 50/60 (83%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSSS 60
          M R ++++K+I+N   RQVTFSKRR GL KKA ELSVLCDAEVALI+FS+ GKL+E+ ++
Sbjct: 1  MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGNA 60


>29908.m005982 mads box protein, putative
          Length = 347

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 48/61 (78%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSSS 60
          M R K++IK+I+N T RQVTFSKRR GL KKA ELS+LCD ++ALI+FS +G+L  +S  
Sbjct: 1  MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGR 60

Query: 61 R 61
          +
Sbjct: 61 K 61


>30221.m002218 mads box protein, putative
          Length = 233

 Score = 79.3 bits (194), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSS 59
          M R KI IK+I+N T RQVTFSKRR GL KK  ELSVLCDA++ LI+FS+TGK+ +Y +
Sbjct: 1  MGRGKIPIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCT 59


>29782.m000119 Floral homeotic protein DEFICIENS, putative
          Length = 235

 Score = 79.0 bits (193), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/55 (67%), Positives = 48/55 (87%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLF 55
          M R KI+IKKI+N T RQVT+SKRR G+FKKA+EL+VLCDA+V+LI+FS +G+ F
Sbjct: 1  MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGRKF 55


>29648.m001978 mads box protein, putative
          Length = 234

 Score = 77.4 bits (189), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 51/59 (86%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSS 59
          M R +I+IK+I+N + RQVT+SKRR G+ KKA+E++VLCDAEV+LI+F+++GK+ EY S
Sbjct: 1  MGRGRIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAEVSLIIFASSGKMHEYCS 59


>29907.m000663 mads box protein, putative
          Length = 205

 Score = 76.6 bits (187), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSS 59
          MAR K+++K+I+N   RQVTF KRR GL KKA+ELSVLCDAE+ L +FSA GKL++ ++
Sbjct: 1  MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDLAT 59


>30170.m013776 mads box protein, putative
          Length = 230

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/58 (65%), Positives = 47/58 (81%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYS 58
          M R K++IK+I+N T RQVTFSKRR GL KKA ELSVLCD +VALI+FS +G+L  +S
Sbjct: 1  MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFS 58


>28348.m000077 mads box protein, putative
          Length = 215

 Score = 74.7 bits (182), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 32/54 (59%), Positives = 44/54 (81%)

Query: 2  AREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLF 55
           R+KI+IKK++N+  R VTFSKR+ G+FKKA ELS LC AE+A+++FS  GK+F
Sbjct: 17 GRQKIEIKKLENVNRRYVTFSKRKHGIFKKATELSTLCGAEIAVVLFSGHGKVF 70


>29693.m002039 mads box protein, putative
          Length = 172

 Score = 72.0 bits (175), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 44/60 (73%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSSS 60
          M R KI++K + + ++RQVTFSKRR GLFKKA EL+ LC A++A++VFS  GK F +   
Sbjct: 1  MGRRKIEMKMVKDTSSRQVTFSKRRTGLFKKANELATLCAAQIAIVVFSPGGKPFSFGHP 60


>30138.m004061 mads box protein, putative
          Length = 363

 Score = 71.2 bits (173), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/53 (56%), Positives = 43/53 (81%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGK 53
          M R K+KIK++++ + RQVT+SKRR G+ KKA+ELS+LCD  + L++FS TGK
Sbjct: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKAKELSILCDIHIVLLMFSPTGK 53


>29813.m001508 mads box protein, putative
          Length = 360

 Score = 69.7 bits (169), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 41/53 (77%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGK 53
          M R K+KIKK++N   RQ T+ KR+ G+ KKA+ELS+LCD ++ L++FS TGK
Sbjct: 1  MGRVKLKIKKLENTNGRQATYGKRKHGIIKKAKELSILCDIDIILLMFSPTGK 53


>29613.m000367 mads box protein, putative
          Length = 183

 Score = 68.6 bits (166), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 42/66 (63%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSSS 60
          + R+KI I+KI   +  QVTFSKRR GLFKKA EL  LC  E+A+IVFS  GK F +   
Sbjct: 6  LGRQKIAIEKISKKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGKAFSFGHP 65

Query: 61 RYCSSM 66
             S +
Sbjct: 66 EVGSVL 71


>27866.m000233 mads box protein, putative
          Length = 217

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/56 (57%), Positives = 42/56 (75%)

Query: 2  AREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEY 57
           R+KI+IK I+  +  QVTFSKRR GLFKKA ELS+LC A+VA++ FS   K+F +
Sbjct: 13 GRQKIEIKPIEGKSNLQVTFSKRRAGLFKKASELSLLCGAQVAVLAFSPGKKVFAF 68


>30099.m001672 mads box protein, putative
          Length = 217

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 41/56 (73%)

Query: 2  AREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEY 57
           R+KI + K+ N +  QVTFSKRR GLFKKA ELS LC AE+A+IVFS   K+F +
Sbjct: 7  GRQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSF 62


>29693.m002042 mads box protein, putative
          Length = 220

 Score = 66.2 bits (160), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 2  AREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEY 57
           R+KI +K+I+N   R +TFSKRR G++KKA EL  LC AEV ++VFS  GK F +
Sbjct: 9  GRQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSF 64


>30099.m001671 mads box protein, putative
          Length = 226

 Score = 65.5 bits (158), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/57 (56%), Positives = 39/57 (68%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEY 57
          + R+KI I+KI   T  QVTFSKRR GLFKKA EL  LC  E+A++VFS   K F +
Sbjct: 26 LGRQKIAIEKISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSF 82


>29693.m002041 mads box protein, putative
          Length = 239

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2  AREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYS 58
           R+KI++KKI+N   R +TFSKRR G++KKA EL  L  AE+A +V+S  GK F ++
Sbjct: 12 GRQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSFA 68


>28830.m000229 mads box protein, putative
          Length = 197

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYS 58
          M R+K ++  I   +ARQV+FSKRR G+FKKA EL  LC  E A+++FS  GK F + 
Sbjct: 1  MGRKKTQMSLIQGESARQVSFSKRRTGIFKKASELCTLCAVEAAVVIFSPGGKAFTFG 58


>29739.m003627 mads box protein, putative
          Length = 62

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 41/53 (77%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGK 53
          M R K+KI +++++ ARQV +SKR+ G+ KK +EL+ LCD ++ LI+FS +GK
Sbjct: 1  MGRRKLKILRLESVKARQVKYSKRKLGVLKKGKELATLCDVDLGLIMFSPSGK 53


>29838.m001672 mads box protein, putative
          Length = 207

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query: 2  AREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGKLFEYSS 59
           R++I++ KI   + R VTFSKRR G+FKKA ELS LC AE+++IVFS   + F + +
Sbjct: 8  GRQRIEMVKISKESNRLVTFSKRRYGVFKKASELSTLCGAEISIIVFSPGKRAFSFGN 65


>29653.m000299 mads box protein, putative
          Length = 166

 Score = 55.1 bits (131), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 38/57 (66%), Gaps = 3/57 (5%)

Query: 5  KIKIKKI-DNITARQVTFSKRRRGLFKKAEELSVL--CDAEVALIVFSATGKLFEYS 58
          KI+IKKI DN T   VTFSKRR GLFKKA E   L    AEVALI FS +G+ F + 
Sbjct: 29 KIEIKKIQDNKTGLIVTFSKRRTGLFKKAMEFCNLDGGGAEVALITFSPSGRPFSFG 85


>27893.m000228 mads box protein, putative
          Length = 349

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 5  KIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGK 53
          K  +KK+++   R V+F+KRR GLF KA EL +LCDA++A++V S   K
Sbjct: 6  KRPMKKLESQKQRSVSFTKRRNGLFNKAAELFMLCDAQLAVLVASPCSK 54


>29912.m005524 mads box protein, putative
          Length = 338

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 33/49 (67%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFS 49
          M R K+ ++ I N  +R +T+ KR++GL KK +E  +LCD +  +I+FS
Sbjct: 1  MGRGKLNMELISNEKSRMITYHKRKKGLTKKVQEFHILCDVDACIIIFS 49


>28180.m000391 mads box protein, putative
          Length = 328

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 34/49 (69%)

Query: 5  KIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGK 53
          K+ +KK +    R V+F+KRR GLF KA EL +LCDA++AL+V S   +
Sbjct: 6  KLPMKKRETKKQRSVSFTKRRYGLFNKAAELFMLCDAQLALLVSSPCSR 54


>30190.m010925 conserved hypothetical protein
          Length = 386

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 1  MAREKIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVALIVFSATGK 53
          M   +IK++ I+  + R +T+ KR++ L KK  E S+LC  E  LI+F+   K
Sbjct: 1  MGHSRIKMELIEKESTRMLTYQKRKKSLVKKVSEFSILCGVEACLIIFAPKHK 53