Jatropha Genome Database

JcCB0186021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186021.10 + phase: 0 
         (82 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008820 40S ribosomal protein S21e, putative                    168   5e-43
29726.m004036 40S ribosomal protein S21e, putative                    151   5e-38

>30128.m008820 40S ribosomal protein S21e, putative
          Length = 82

 Score =  168 bits (425), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 79/82 (96%), Positives = 81/82 (98%)

Query: 1  MQNDEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDANGNYTGQFTTFALCGFVRA 60
          MQN+EGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDANG+YTGQFTTFALCGFVRA
Sbjct: 1  MQNEEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDANGHYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWLKKKVELRQQ 82
          QGDADSALDRLW KKKVELRQQ
Sbjct: 61 QGDADSALDRLWQKKKVELRQQ 82


>29726.m004036 40S ribosomal protein S21e, putative
          Length = 82

 Score =  151 bits (382), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/82 (86%), Positives = 74/82 (90%)

Query: 1  MQNDEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDANGNYTGQFTTFALCGFVRA 60
          MQN+EG NMDLYIPRKCSATNRLITSKDHASVQINIGHLD  G Y GQFTTFALCGF+RA
Sbjct: 1  MQNEEGVNMDLYIPRKCSATNRLITSKDHASVQINIGHLDDRGIYNGQFTTFALCGFIRA 60

Query: 61 QGDADSALDRLWLKKKVELRQQ 82
          QGD DSA+DRLW KKKVE RQQ
Sbjct: 61 QGDGDSAIDRLWQKKKVEARQQ 82