Jatropha Genome Database

JcCB0185851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0185851.10 - phase: 0 
         (63 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29596.m000699 mads box protein, putative                              118   5e-28
29804.m001536 mads box protein, putative                              115   6e-27
30174.m008934 mads box protein, putative                               91   8e-20
29648.m001978 mads box protein, putative                               91   1e-19
30221.m002218 mads box protein, putative                               89   3e-19
29907.m000663 mads box protein, putative                               88   7e-19
30147.m014133 mads box protein, putative                               87   1e-18
29838.m001690 mads box protein, putative                               87   2e-18
30138.m003939 mads box protein, putative                               84   2e-17
29908.m005982 mads box protein, putative                               83   3e-17
30170.m013776 mads box protein, putative                               82   8e-17
29782.m000119 Floral homeotic protein DEFICIENS, putative              81   1e-16
30138.m004061 mads box protein, putative                               75   6e-15
29693.m002039 mads box protein, putative                               71   9e-14
29693.m002042 mads box protein, putative                               71   1e-13
29813.m001508 mads box protein, putative                               67   1e-12
29613.m000367 mads box protein, putative                               66   4e-12
30099.m001671 mads box protein, putative                               65   7e-12
29739.m003627 mads box protein, putative                               64   2e-11
28348.m000077 mads box protein, putative                               63   3e-11
30099.m001672 mads box protein, putative                               63   3e-11
27866.m000233 mads box protein, putative                               63   4e-11
28830.m000229 mads box protein, putative                               62   6e-11
29693.m002041 mads box protein, putative                               61   1e-10
29912.m005524 mads box protein, putative                               57   1e-09
29838.m001672 mads box protein, putative                               57   3e-09
27893.m000228 mads box protein, putative                               50   3e-07
29653.m000299 mads box protein, putative                               47   3e-06
30190.m010925 conserved hypothetical protein                           47   3e-06

>29596.m000699 mads box protein, putative
          Length = 262

 Score =  118 bits (296), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/60 (95%), Positives = 60/60 (100%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAST 60
          MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGV+IFSSTGKLYDF+S+
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSSS 60


>29804.m001536 mads box protein, putative
          Length = 266

 Score =  115 bits (287), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/60 (93%), Positives = 59/60 (98%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAST 60
          MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKA+EL+ILCDAEVGVIIFSST KLYD+AST
Sbjct: 28 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIIFSSTSKLYDYAST 87


>30174.m008934 mads box protein, putative
          Length = 244

 Score = 91.3 bits (225), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 52/59 (88%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAS 59
          MGRG++ ++RI+N  +RQVTFSKRRNGLLKKA EL++LCDAEV +IIFSS GKLY+F +
Sbjct: 1  MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGN 59


>29648.m001978 mads box protein, putative
          Length = 234

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/59 (64%), Positives = 55/59 (93%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAS 59
          MGRG+I I+RI+NS++RQVT+SKRRNG++KKAKE+ +LCDAEV +IIF+S+GK++++ S
Sbjct: 1  MGRGRIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAEVSLIIFASSGKMHEYCS 59


>30221.m002218 mads box protein, putative
          Length = 233

 Score = 89.4 bits (220), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/59 (67%), Positives = 51/59 (86%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAS 59
          MGRGKI I+RI+N T+RQVTFSKRR GLLKK  EL++LCDA++G+IIFSSTGK+  + +
Sbjct: 1  MGRGKIPIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCT 59


>29907.m000663 mads box protein, putative
          Length = 205

 Score = 88.2 bits (217), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/59 (66%), Positives = 50/59 (84%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAS 59
          M RGK+ ++RI+N   RQVTF KRR+GLLKKAKEL++LCDAE+G+ IFS+ GKLYD A+
Sbjct: 1  MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDLAT 59


>30147.m014133 mads box protein, putative
          Length = 213

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/59 (76%), Positives = 52/59 (88%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAS 59
          M RGKI +RRI+N+TSRQVTFSKRRNGLLKKA EL++LCDAEV VIIFS  G+L +FAS
Sbjct: 1  MVRGKIQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLSEFAS 59


>29838.m001690 mads box protein, putative
          Length = 61

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 52/61 (85%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAST 60
          M R KI I++IDN T+RQVTFSKRR GL KKA EL+ LCDAE+ +++FS+TGKL+++AS+
Sbjct: 1  MTRQKIQIKKIDNITARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSATGKLFEYASS 60

Query: 61 R 61
          R
Sbjct: 61 R 61


>30138.m003939 mads box protein, putative
          Length = 244

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 52/59 (88%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAS 59
          MGRG++ ++RI+N  +RQVTFSKRR GLLKKA E+++LCDAEV +I+FS+ GKL+++++
Sbjct: 1  MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59


>29908.m005982 mads box protein, putative
          Length = 347

 Score = 82.8 bits (203), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/61 (59%), Positives = 51/61 (83%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAST 60
          MGR K+ I+RI+N+T+RQVTFSKRRNGL+KKA EL+ILCD ++ +I+FS +G+L  F+  
Sbjct: 1  MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGR 60

Query: 61 R 61
          +
Sbjct: 61 K 61


>30170.m013776 mads box protein, putative
          Length = 230

 Score = 81.6 bits (200), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/62 (59%), Positives = 52/62 (83%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAST 60
          MGR K+ I+RI+N+T+RQVTFSKRRNGL+KKA EL++LCD +V +I+FS +G+L  F+  
Sbjct: 1  MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFSGI 60

Query: 61 RS 62
          +S
Sbjct: 61 KS 62


>29782.m000119 Floral homeotic protein DEFICIENS, putative
          Length = 235

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 52/60 (86%), Gaps = 1/60 (1%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTG-KLYDFAS 59
          MGRGKI I++I+N T+RQVT+SKRRNG+ KKA+EL +LCDA+V +I+FS++G K ++F S
Sbjct: 1  MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGRKFHEFIS 60


>30138.m004061 mads box protein, putative
          Length = 363

 Score = 75.5 bits (184), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/53 (60%), Positives = 47/53 (88%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGK 53
          MGR K+ I+R++++++RQVT+SKRRNG+LKKAKEL+ILCD  + +++FS TGK
Sbjct: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKAKELSILCDIHIVLLMFSPTGK 53


>29693.m002039 mads box protein, putative
          Length = 172

 Score = 71.2 bits (173), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 43/57 (75%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDF 57
          MGR KI ++ + +++SRQVTFSKRR GL KKA ELA LC A++ +++FS  GK + F
Sbjct: 1  MGRRKIEMKMVKDTSSRQVTFSKRRTGLFKKANELATLCAAQIAIVVFSPGGKPFSF 57


>29693.m002042 mads box protein, putative
          Length = 220

 Score = 70.9 bits (172), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 2  GRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFA 58
          GR KI ++RI+N   R +TFSKRR+G+ KKA EL  LC AEVG+++FS  GK + F 
Sbjct: 9  GRQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSFG 65


>29813.m001508 mads box protein, putative
          Length = 360

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 44/53 (83%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGK 53
          MGR K+ I++++N+  RQ T+ KR++G++KKAKEL+ILCD ++ +++FS TGK
Sbjct: 1  MGRVKLKIKKLENTNGRQATYGKRKHGIIKKAKELSILCDIDIILLMFSPTGK 53


>29613.m000367 mads box protein, putative
          Length = 183

 Score = 65.9 bits (159), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 37/60 (61%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAST 60
          +GR KI I +I   +  QVTFSKRR GL KKA EL  LC  E+ +I+FS  GK + F   
Sbjct: 6  LGRQKIAIEKISKKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGKAFSFGHP 65


>30099.m001671 mads box protein, putative
          Length = 226

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 36/58 (62%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFA 58
          +GR KI I +I   T  QVTFSKRR GL KKA EL  LC  E+ +++FS   K + F 
Sbjct: 26 LGRQKIAIEKISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSFG 83


>29739.m003627 mads box protein, putative
          Length = 62

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 42/53 (79%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGK 53
          MGR K+ I R+++  +RQV +SKR+ G+LKK KELA LCD ++G+I+FS +GK
Sbjct: 1  MGRRKLKILRLESVKARQVKYSKRKLGVLKKGKELATLCDVDLGLIMFSPSGK 53


>28348.m000077 mads box protein, putative
          Length = 215

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 41/54 (75%)

Query: 2  GRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLY 55
          GR KI I++++N   R VTFSKR++G+ KKA EL+ LC AE+ V++FS  GK++
Sbjct: 17 GRQKIEIKKLENVNRRYVTFSKRKHGIFKKATELSTLCGAEIAVVLFSGHGKVF 70


>30099.m001672 mads box protein, putative
          Length = 217

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/57 (50%), Positives = 41/57 (71%)

Query: 2  GRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFA 58
          GR KI + ++ N ++ QVTFSKRR+GL KKA EL+ LC AE+ +I+FS   K++ F 
Sbjct: 7  GRQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSFG 63


>27866.m000233 mads box protein, putative
          Length = 217

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/57 (52%), Positives = 40/57 (70%)

Query: 2  GRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFA 58
          GR KI I+ I+  ++ QVTFSKRR GL KKA EL++LC A+V V+ FS   K++ F 
Sbjct: 13 GRQKIEIKPIEGKSNLQVTFSKRRAGLFKKASELSLLCGAQVAVLAFSPGKKVFAFG 69


>28830.m000229 mads box protein, putative
          Length = 197

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 36/58 (62%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFA 58
          MGR K  +  I   ++RQV+FSKRR G+ KKA EL  LC  E  V+IFS  GK + F 
Sbjct: 1  MGRKKTQMSLIQGESARQVSFSKRRTGIFKKASELCTLCAVEAAVVIFSPGGKAFTFG 58


>29693.m002041 mads box protein, putative
          Length = 239

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query: 2  GRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFA 58
          GR KI +++I+N   R +TFSKRR+G+ KKA EL  L  AE+  +++S  GK + FA
Sbjct: 12 GRQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSFA 68


>29912.m005524 mads box protein, putative
          Length = 338

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 33/49 (67%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFS 49
          MGRGK+ +  I N  SR +T+ KR+ GL KK +E  ILCD +  +IIFS
Sbjct: 1  MGRGKLNMELISNEKSRMITYHKRKKGLTKKVQEFHILCDVDACIIIFS 49


>29838.m001672 mads box protein, putative
          Length = 207

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 2  GRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGKLYDFAS 59
          GR +I + +I   ++R VTFSKRR G+ KKA EL+ LC AE+ +I+FS   + + F +
Sbjct: 8  GRQRIEMVKISKESNRLVTFSKRRYGVFKKASELSTLCGAEISIIVFSPGKRAFSFGN 65


>27893.m000228 mads box protein, putative
          Length = 349

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/46 (43%), Positives = 33/46 (71%)

Query: 8  IRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGK 53
          ++++++   R V+F+KRRNGL  KA EL +LCDA++ V++ S   K
Sbjct: 9  MKKLESQKQRSVSFTKRRNGLFNKAAELFMLCDAQLAVLVASPCSK 54


>29653.m000299 mads box protein, putative
          Length = 166

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 5  KIVIRRI-DNSTSRQVTFSKRRNGLLKKAKELAIL--CDAEVGVIIFSSTGKLYDF 57
          KI I++I DN T   VTFSKRR GL KKA E   L    AEV +I FS +G+ + F
Sbjct: 29 KIEIKKIQDNKTGLIVTFSKRRTGLFKKAMEFCNLDGGGAEVALITFSPSGRPFSF 84


>30190.m010925 conserved hypothetical protein
          Length = 386

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 32/53 (60%)

Query: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGK 53
          MG  +I +  I+  ++R +T+ KR+  L+KK  E +ILC  E  +IIF+   K
Sbjct: 1  MGHSRIKMELIEKESTRMLTYQKRKKSLVKKVSEFSILCGVEACLIIFAPKHK 53