Jatropha Genome Database

JcCB0185581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0185581.10 + phase: 0 /partial
         (265 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29644.m000185 tRNA-dihydrouridine synthase, putative                  397   e-111
28179.m000472 tRNA-dihydrouridine synthase, putative                  101   5e-22
30131.m007147 tRNA-dihydrouridine synthase, putative                   63   2e-10
29864.m001493 tRNA-dihydrouridine synthase A, putative                 56   2e-08

>29644.m000185 tRNA-dihydrouridine synthase, putative
          Length = 426

 Score =  397 bits (1020), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/268 (75%), Positives = 215/268 (80%), Gaps = 16/268 (5%)

Query: 1   MKSLFSPHNISAKTLLFNSLKPLMASSLTHXXXXXXXXXXXXXXCSNPXXXXXXXXXXXX 60
           M+SLF  H    K LL  SLKPLMASSLT               CS+             
Sbjct: 1   MRSLFCLH----KPLLSTSLKPLMASSLTRTVAIDQDNDDDEVLCSS---------AHQE 47

Query: 61  HTS-SSFPDTASSCCLDPVGR--YLNGESRVERAWAHWTKLGRPKLIVAPMVDNSELPFR 117
           HTS S+ PDT SS CL       YLNGESRV+RAWAHW K+G+PKL+VAPMVDNSELPFR
Sbjct: 48  HTSFSTLPDTVSSSCLGSATPSCYLNGESRVDRAWAHWNKIGKPKLLVAPMVDNSELPFR 107

Query: 118 MLCRKYGAEAAYTPMLHSRIFTENEKYRDQEFTTCKEDRPLFVQFCANDPEILLEAARRV 177
           MLCRKYGA+AAYTPMLHSRIFTENEKYR QEFTTC EDRPLFVQFCANDP+ILLEAAR+V
Sbjct: 108 MLCRKYGADAAYTPMLHSRIFTENEKYRTQEFTTCNEDRPLFVQFCANDPDILLEAARKV 167

Query: 178 EPYCDYVDINLGCPQRIARRGNYGAFLMDKLPLVKSLVEKLTLNLNVPVSCKIRVFPKLE 237
           EPYCDYVDINLGCPQRIARRGNYGAFLMD LPLVKSLVEKL LNLNVPVSCKIR+FPKL+
Sbjct: 168 EPYCDYVDINLGCPQRIARRGNYGAFLMDNLPLVKSLVEKLALNLNVPVSCKIRLFPKLD 227

Query: 238 DTINYARMLEEAGCSLLAVHGRTRDEKD 265
           DTI+YARMLEEAGCSLLAVHGRTRDEKD
Sbjct: 228 DTISYARMLEEAGCSLLAVHGRTRDEKD 255


>28179.m000472 tRNA-dihydrouridine synthase, putative
          Length = 330

 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/174 (35%), Positives = 90/174 (51%), Gaps = 16/174 (9%)

Query: 102 KLIVAPMVDNSELPFRMLCRKYGAEAAYTPMLHSRIFTENEKYRDQE------------- 148
           KL++APMV    LPFR+L  +YGA+  Y   +      + E+  ++              
Sbjct: 6   KLVLAPMVRVGTLPFRLLAAEYGADITYGEEIIDHKLLKCERKVNEYIGCTDFVEKGTEN 65

Query: 149 --FTTCKEDRPLFV-QFCANDPEILLEAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM 205
             F TC E++   V Q   +D    L AA+ V      +DIN+GCP+  +  G  GA L+
Sbjct: 66  VVFRTCNEEKNRVVFQMGTSDAVRALTAAQMVCKDVAAIDINMGCPKSFSISGGMGAALL 125

Query: 206 DKLPLVKSLVEKLTLNLNVPVSCKIRVFPKLEDTINYARMLEEAGCSLLAVHGR 259
            K  L+  ++  L  NL+ PV+CKIR+    +DT+  AR +E+ G S LAVHGR
Sbjct: 126 TKPELIHDILTTLKRNLDSPVTCKIRLLKSPQDTVELARRIEKTGVSALAVHGR 179


>30131.m007147 tRNA-dihydrouridine synthase, putative
          Length = 686

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 73/169 (43%), Gaps = 4/169 (2%)

Query: 100 RPKLIVAPMVDNSELPFRMLCRKYGAEAAYTPMLHSRIFTENEKYRDQEFTTCKEDRPLF 159
           + KL +AP+     LPFR LC+  GA+     M       + +            +    
Sbjct: 332 KGKLYLAPLTTVGNLPFRRLCKLLGADITCGEMAMCTNLLQGQASEWALLRRHSSEDLFG 391

Query: 160 VQFCANDPEILLEAARRVEPYC--DYVDINLGCPQRIARRGNYGAFLMDKLPLVKSLVEK 217
           VQ C    + +      ++  C  D++DIN+GCP  I      G+ L+ K   +KS++  
Sbjct: 392 VQICGAYSDTVARTVELIDQECTVDFIDINMGCPIDIVVSKGAGSCLLTKPMRMKSIIHA 451

Query: 218 LTLNLNVPVSCKIRV--FPKLEDTINYARMLEEAGCSLLAVHGRTRDEK 264
            +  ++ P++ K+R   F       +    +   G + + +HGR+R ++
Sbjct: 452 ASSTVDTPITVKVRTGYFEGKNRIDSLIADISNWGTNAVTIHGRSRQQR 500


>29864.m001493 tRNA-dihydrouridine synthase A, putative
          Length = 375

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 3/144 (2%)

Query: 101 PKLIVAPMVDNSELPFRMLCRKYGAEA-AYTPMLHSRIFTENEKYRDQEFTTCKEDRPLF 159
           P   VAPM+D ++  +R L R     +  YT ML +      +   D+      +  P+ 
Sbjct: 9   PLFSVAPMMDWTDHHYRTLARLISKHSWLYTEMLAAETIVYQQGNLDRFLAFSPQQHPIV 68

Query: 160 VQFCANDPEILLEAARRVEPYC-DYVDINLGCPQ-RIARRGNYGAFLMDKLPLVKSLVEK 217
           +Q   ++ + L +A      Y  D ++ N GCP  R+A  G +G  LM     V   +  
Sbjct: 69  LQIGGSNLDNLAKATELATAYGYDEINFNCGCPSPRVAGHGCFGVRLMLDPKFVGEAMSV 128

Query: 218 LTLNLNVPVSCKIRVFPKLEDTIN 241
           +  N +VPVS K R+     D+ N
Sbjct: 129 IAANTDVPVSVKCRIGVDNHDSYN 152